Protein Domain:Domain Interactions - PD:DI-SFIM database - v. β Aug 2019.
© University of Saida - Dr Tahar Moulay



Master project realized by:Ikram Hamidi and Soumeya Naimi

Proposed & supervised by: Dr. Abdelkrim Rachedi, e-mail: rachedi@bioinformaticstools.org

Protein Domain:Domain Interactions
- Structural & Functional Interface Motifs Database -
PD:DI-SFIM
All Structures
6A0ASTRUCTURE OF A TRIPLE-HELIX REGION OF HUMAN COLLAGEN TYPE II
4CGBCRYSTAL STRUCTURE OF THE TRIMERIZATION DOMAIN OF EML2
6BFSTHE MECHANISM OF GM-CSF INHIBITION BY HUMAN GM-CSF AUTO-ANTI
5OCKCRYSTAL STRUCTURE OF ACPA E4 IN COMPLEX WITH CEP1
3HFEA TRIMERIC FORM OF THE KV7.1 A DOMAIN TAIL
5YUFCRYSTAL STRUCTURE OF PML RING TETRAMER
5LLVCRYSTAL STRUCTURE OF DACM F87M/L110M TRANSTHYRETIN MUTANT
2WQICRYSTAL STRUCTURE OF THE HUMAN P73 TETRAMERIZATION DOMAIN
2KEIREFINED SOLUTION STRUCTURE OF A DIMER OF LAC REPRESSOR DNA- BINDING DOMAIN COMPLEXED TO ITS NATURAL OPERATOR O1
1MEPCRYSTAL STRUCTURE OF STREPTAVIDIN DOUBLE MUTANT S45A/D128A WITH BIOTIN: COOPERATIVE HYDROGEN-BOND INTERACTIONS IN THE STREPTAVIDIN-BIOTIN SYSTEM
1S5YTHE CRYSTAL STRUCTURE OF TREMATOMUS BERNACCHII HEMOGLOBIN OX FERRICYANIDE
3NQUCRYSTAL STRUCTURE OF PARTIALLY TRYPSINIZED (CENP-A/H4)2 HETE
4B3HCRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS FATTY ACID BETA-OXIDATION COMPLEX
2XPICRYSTAL STRUCTURE OF APC/C HETERO-TETRAMER CUT9-HCN1
6CGASTRUCTURE OF THE PR-DUB COMPLEX
2P22STRUCTURE OF THE YEAST ESCRT-I HETEROTETRAMER CORE
5WMNCRYSTAL STRUCTURE OF HLA-B7 IN COMPLEX WITH SPI, AN INFLUENZ
1J7HSOLUTION STRUCTURE OF HI0719, A HYPOTHETICAL PROTEIN FROM HAEMOPHILUS INFLUENZAE
1DBFCHORISMATE MUTASE FROM BACILLUS SUBTILIS AT 1.30 ANGSTROM
1S55MOUSE RANKL STRUCTURE AT 1.9A RESOLUTION
3FWTCRYSTAL STRUCTURE OF LEISHMANIA MAJOR MIF2
5EILCOMPUTATIONAL DESIGN OF A HIGH-AFFINITY METALLOPROTEIN HOMOT CONTAINING A METAL CHELATING NON-CANONICAL AMINO ACID
5Y6UCRYSTAL STRUCTURE OF WILD-TYPE YABJ PROTEIN FROM BACILLUS SU (NATTO)
1S7MCRYSTAL STRUCTURE OF HIABD1
1T0ACRYSTAL STRUCTURE OF 2C-METHYL-D-ERYTHRITOL-2,4-CYCLODIPHOSP SYNTHASE FROM SHEWANELLA ONEIDENSIS
3DJHMACROPHAGE MIGRATION INHIBITORY FACTOR (MIF) AT 1.25 A RESOL
4J3HRING CYCLE FOR DILATING AND CONSTRICTING THE NUCLEAR PORE: S OF A NUP54 HOMO-TETRAMER
4D2HCRYSTAL STRUCTURE OF THE TETRAMERISATION DOMAIN OF HUMAN CTI
3KGTV30M MUTANT HUMAN TRANSTHYRETIN (TTR) COMPLEXED WITH GENISTE (V30M:GEN) PH 7.5
1CBMTHE 1.8 ANGSTROM STRUCTURE OF CARBONMONOXY-BETA4 HEMOGLOBIN: OF A HOMOTETRAMER WITH THE R QUATERNARY STRUCTURE OF LIGAND ALPHA2BETA2 HEMOGLOBIN
4MIFPYRANOSE 2-OXIDASE FROM PHANEROCHAETE CHRYSOSPORIUM, WILD TY NATURAL SOURCE
4MIGPYRANOSE 2-OXIDASE FROM PHANEROCHAETE CHRYSOSPORIUM, RECOMBI TYPE
1KKCCRYSTAL STRUCTURE OF ASPERGILLUS FUMIGATUS MNSOD
1N7YSTREPTAVIDIN MUTANT N23E AT 1.96A
1N9MSTREPTAVIDIN MUTANT S27A WITH BIOTIN AT 1.6A RESOLUTION
2NB1P63/P73 HETERO-TETRAMERISATION DOMAIN
4NUVHETEROTETRAMER STRUCTURE OF REGION II FROM PLASMODIUM VIVAX BINDING PROTEIN (PVDBP) BOUND TO THE ECTODOMAIN OF THE DUFF RECEPTOR FOR CHEMOKINES (DARC)
5TCFCRYSTAL STRUCTURE OF TRYPTOPHAN SYNTHASE FROM M. TUBERCULOSI LIGAND-FREE FORM
1TAFDROSOPHILA TBP ASSOCIATED FACTORS DTAFII42/DTAFII62 HETEROTE
3NQJCRYSTAL STRUCTURE OF (CENP-A/H4)2 HETEROTETRAMER
3V9RCRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE MHF COMPLEX
2WTTSTRUCTURE OF THE HUMAN P73 TETRAMERIZATION DOMAIN (CRYSTAL FORM II)
1XK4CRYSTAL STRUCTURE OF HUMAN CALPROTECTIN(S100A8/S100A9)
2YFWHETEROTETRAMER STRUCTURE OF KLUYVEROMYCES LACTIS CSE4,H4
2ZYZPYROBACULUM AEROPHILUM SPLICING ENDONUCLEASE
2QPFCRYSTAL STRUCTURE OF MOUSE TRANSTHYRETIN
3MEZX-RAY STRUCTURAL ANALYSIS OF A MANNOSE SPECIFIC LECTIN FROM CROCUS (CROCUS VERNUS)
1XOFHETEROOLIGOMERIC BETA BETA ALPHA MINIPROTEIN
2KSOSTRUCTURE AND FUNCTION OF THE EPHA2:SHIP2 SAM DOMAI HETERODIMER
1YCSSTRUCTURE OF THE P53 TUMOR SUPPRESSOR BOUND TO THE ANKYRIN AND SH3 DOMAINS OF 53BP2
2LBFSOLUTION STRUCTURE OF THE DIMERIZATION DOMAIN OF HUMAN RIBOS PROTEIN P1/P2 HETERODIMER
2RVQSOLUTION STRUCTURE OF THE ISOLATED HISTONE H2A-H2B HETERODIM
2MY2SNU17P-BUD13P STRUCTURE INTERMEDIATE DURING RES COMPLEX ASSE
2MY3SNU17P-PML1P STRUCTURE INTERMEDIATE DURING RES COMPLEX ASSEM
4BEHSOLUTION STRUCTURE OF HUMAN RIBOSOMAL PROTEIN P1.P2 HETERODI
4RLJCRYSTAL STRUCTURE OF (3R)-HYDROXYACYL-ACP DEHYDRATASE HADAB DIMER FROM MYCOBACTERIUM TUBERCULOSIS
4LWSESXA : ESXB (SEMET) HETERO-DIMER FROM THERMOMONOSPORA CURVAT
4P5ECRYSTAL STRUCTURE OF HUMAN DNPH1 (RCL) WITH 6-NAPHTHYL-PURIN RIBOSIDE-MONOPHOSPHATE
4KO0CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) IN COM AN ANILINYLPYRIMIDINE DERIVATIVE (JLJ-135)
4P5DCRYSTAL STRUCTURE OF RAT DNPH1 (RCL) WITH 6-NAPHTHYL-PURINE- MONOPHOSPHATE
4RLWCRYSTAL STRUCTURE OF (3R)-HYDROXYACYL-ACP DEHYDRATASE HADAB DIMER FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH BUTEIN
4RLUCRYSTAL STRUCTURE OF (3R)-HYDROXYACYL-ACP DEHYDRATASE HADAB DIMER FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH 2',4,4 TRIHYDROXYCHALCONE
4RLTCRYSTAL STRUCTURE OF (3R)-HYDROXYACYL-ACP DEHYDRATASE HADAB DIMER FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH FISETI
5G5GESCHERICHIA COLI PERIPLASMIC ALDEHYDE OXIDASE
5G5HESCHERICHIA COLI PERIPLASMIC ALDEHYDE OXIDASE R440H MUTANT
4LNRTHE STRUCTURE OF HLA-B*35:01 IN COMPLEX WITH THE PEPTIDE (RP
4NUUHETEROTRIMER STRUCTURE OF REGION II FROM PLASMODIUM VIVAX DU BINDING PROTEIN (PVDBP) BOUND TO THE ECTODOMAIN OF THE DUFF RECEPTOR FOR CHEMOKINES (DARC)
2MKCCOOPERATIVE STRUCTURE OF THE HETEROTRIMERIC PRE-MRNA RETENTI SPLICING COMPLEX
5OEKPUTATIVE ACTIVE DIMERIC STATE OF GHR TRANSMEMBRANE DOMAIN
5OHDPUTATIVE INACTIVE (DORMANT) DIMERIC STATE OF GHR TRANSMEMBRA
5NOCSOLUTION NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF PARB (SPO
5US5SOLUTION STRUCTURE OF THE IREB HOMODIMER
6MS4CRYSTAL STRUCTURE OF THE DENR-MCT-1 COMPLEX
5XLVMYCOBACTERIUM TUBERCULOSIS PANTOTHENATE KINASE MUTANT F254A
6E4HSOLUTION NMR STRUCTURE OF THE COLIED-COIL PALB2 HOMODIMER
6NRXCRYSTAL STRUCTURE OF DIP-ETA IG1 HOMODIMER
6HATGLOBULAR DOMAIN OF HERPESVIRUS SAIMIRI ORF57
6FV5QTRT2, THE NON-CATALYTIC SUBUNIT OF MURINE TRNA-GUANINE TRANSGLYCOSYLASE
6AKLCRYSTAL STRUCTURE OF STRIATIN3 IN COMPLEX WITH SIKE1 COILED- DOMAIN
5XLWMYCOBACTERIUM TUBERCULOSIS PANTOTHENATE KINASE MUTANT F247A
1A4UALCOHOL DEHYDROGENASE FROM DROSOPHILA LEBANONENSIS
1AFWTHE 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE DIMERIC PEROXISOMAL THIOLASE OF SACCHAROMYCES CEREVISIAE
1BD0ALANINE RACEMASE COMPLEXED WITH ALANINE PHOSPHONATE
1BJWASPARTATE AMINOTRANSFERASE FROM THERMUS THERMOPHILUS
1CNZ3-ISOPROPYLMALATE DEHYDROGENASE (IPMDH) FROM SALMONELLA TYPHIMURIUM
1JFLCRYSTAL STRUCTURE DETERMINATION OF ASPARTATE RACEMASE FROM A
1LK9THE THREE-DIMENSIONAL STRUCTURE OF ALLIINASE FROM GARLIC
1LQ9CRYSTAL STRUCTURE OF A MONOOXYGENASE FROM THE GENE ACTVA-ORF STREPTOMYCES COELICOLOR STRAIN A3(2)
1M4IAMINOGLYCOSIDE 2'-N-ACETYLTRANSFERASE FROM MYCOBACTERIUM TUB COMPLEX WITH COENZYME A AND KANAMYCIN A
1MJHSTRUCTURE-BASED ASSIGNMENT OF THE BIOCHEMICAL FUNCTION OF HYPOTHETICAL PROTEIN MJ0577: A TEST CASE OF STRUCTURAL GENOMICS
5NF8SOLUTION STRUCTURE OF DETERGENT-SOLUBILIZED RCF1, A YEAST MITOCHONDRIAL INNER MEMBRANE PROTEIN INVOLVED IN RESPIRATOR III/IV SUPERCOMPLEX FORMATION
5I7UHUMAN DPP4 IN COMPLEX WITH A NOVEL TRICYCLIC HETERO-CYCLE IN
5EZFRACEMIC CRYSTAL STRUCTURES OF PRIBNOW BOX CONSENSUS PROMOTER (PBCA)
1JIWCRYSTAL STRUCTURE OF THE APR-APRIN COMPLEX
1SLURAT ANIONIC N143H, E151H TRYPSIN COMPLEXED TO A86H ECOTIN
2L35STRUCTURE OF THE DAP12-NKG2C TRANSMEMBRANE HETEROTRIMER
1GG2G PROTEIN HETEROTRIMER MUTANT GI_ALPHA_1(G203A) BETA_1 GAMMA_2 WITH GDP BOUND
4YLICL-K1 TRIMER
6B2ESTRUCTURE OF FULL LENGTH HUMAN AMPK (A2B2G1) IN COMPLEX WITH MOLECULE ACTIVATOR SC4
2BAZSTRUCTURE OF YOSS, A PUTATIVE DUTPASE FROM BACILLUS SUBTILIS
5KEWVIBRIO PARAHAEMOLYTICUS VTRA/VTRC COMPLEX BOUND TO THE BILE TAURODEOXYCHOLATE
5KEVVIBRIO PARAHAEMOLYTICUS VTRA/VTRC COMPLEX
Dimers
1YCSABHeterodimer
6MS4ABHeterodimer
5I7UABHeterodimer
5EZFABHeterodimer
4RLJABHeterodimer
4LWSABHeterodimer
4P5EABHeterodimer
1JIWIPHeterodimer
1SLUABHeterodimer
4KO0ABHeterodimer
4P5DACHeterodimer
4RLWABHeterodimer
4RLUABHeterodimer
6NRXABHomodimer
6HATABHomodimer
4RLTABHeterodimer
2RVQCDHeterodimer
2MY2ABHeterodimer
2MY3ABHeterodimer
4BEHABHeterodimer
2LBFABHeterodimer
2KSOABHeterodimer
1LQ9ABHomodimer
1M4IABHomodimer
1AFWABHomodimer
1CNZABHomodimer
1BD0ABHomodimer
1A4UABHomodimer
1LK9ABHomodimer
1BJWABHomodimer
1JFLABHomodimer
1MJHABHomodimer
6FV5ABHomodimer
5XLVABHomodimer
5XLWABHomodimer
6E4HABHomodimer
5OEKABHomodimer
5NOCABHomodimer
5US5ABHomodimer
2L35ABHeterodimer
5OHDABHeterodimer
5KEWABHeterodimer
5KEVABHeterodimer
5NF8ABHomodimer
Trimers
3FWTAAAHomotrimer
5EILABCHomotrimer
5Y6UABCHomotrimer
3HFEABCHomotrimer
5WMNABEHomotrimer
4CGBABCHomotrimer
6A0AABCHomotrimer
6BFSLHCHomotrimer
5OCKLHAHomotrimer
1J7HABCHomotrimer
1DBFABCHomotrimer
1S55ABCHomotrimer
1S7MABCHomotrimer
1T0AABCHomotrimer
3DJHABCHomotrimer
6AKLABCHeterotrimer
6B2EABCHeterotrimer
4LNRABCHeterotrimer
4NUUABCHeterotrimer
2MKCABCHeterotrimer
5G5GABCHeterotrimer
5G5HABCHeterotrimer
1GG2ABGHeterotrimer
4YLIABCHomotrimer
2BAZABCHomotrimer
Tetramers
5YUFABCDHomotetramer
4J3HABABHomotetramer
5LLVABCDHomotetramer
1S5YABCDHomotetramer
2WQIABCDHomotetramer
1MEPABCDHomotetramer
2KEIABCDHomotetramer
4D2HABCDHomotetramer
3KGTABABHomotetramer
1CBMABCDHomotetramer
4MIFABCDHomotetramer
4MIGABCDHomotetramer
1KKCABXYHomotetramer
1N7YABCDHomotetramer
1N9MABCDHomotetramer
2NB1ABCDHomotetramer
3NQUABABHeterotetramer
4B3HABCDHeterotetramer
2XPIADBEHeterotetramer
6CGAACBDHeterotetramer
2P22ABCDHeterotetramer
4NUVABCDHeterotetramer
5TCFABCDHeterotetramer
1TAFABABHeterotetramer
3NQJABABHeterotetramer
3V9RABCDHeterotetramer
2WTTABCDHeterotetramer
1XK4ABCDHeterotetramer
2YFWABGHHeterotetramer
2ZYZABCDHeterotetramer
2QPFABCDHeterotetramer
3MEZABCDHeterotetramer
1XOFABABHeterotetramer



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