There are 27 SFM Motifs: |
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Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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3 | 3INM | alpha-Ketoglutarate dehydrogenase | X-RAY | 2.10 | 0.220
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| Motif No./Chain | Mode | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: SHHLLH
+1w
> Sequence: TSNRRYDA
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AKG /(511) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | No SSE | 77 | THR | CB | O3 | A | 511 | 3.35 | van der Waals | A | No SSE | 77 | THR | OG1 | C5 | A | 511 | 3.55 | van der Waals | A | No SSE | 77 | THR | OG1 | O3 | A | 511 | 2.78 | H.Bond | A | No SSE | 77 | THR | OG1 | O4 | A | 511 | 3.61 | H.Bond | A | No SSE | 77 | THR | CG2 | O3 | A | 511 | 3.94 | van der Waals | A | 94-104 H: 1 | 94 | SER | CB | O4 | A | 511 | 3.51 | van der Waals | A | 94-104 H: 1 | 94 | SER | OG | C5 | A | 511 | 3.48 | van der Waals | A | 94-104 H: 1 | 94 | SER | OG | O3 | A | 511 | 3.77 | H.Bond | A | 94-104 H: 1 | 94 | SER | OG | O4 | A | 511 | 2.53 | H.Bond | A | 94-104 H: 1 | 96 | ASN | CB | O4 | A | 511 | 3.69 | van der Waals | A | 94-104 H: 1 | 96 | ASN | CG | O4 | A | 511 | 3.76 | van der Waals | A | 94-104 H: 1 | 96 | ASN | ND2 | C3 | A | 511 | 3.93 | H.Bond | A | 94-104 H: 1 | 96 | ASN | ND2 | C5 | A | 511 | 3.84 | H.Bond | A | 94-104 H: 1 | 96 | ASN | ND2 | O4 | A | 511 | 2.89 | H.Bond | A | 94-104 H: 1 | 100 | ARG | CZ | O1 | A | 511 | 3.3 | van der Waals | A | 94-104 H: 1 | 100 | ARG | NH1 | O1 | A | 511 | 3.16 | H.Bond | A | 94-104 H: 1 | 100 | ARG | NH2 | C1 | A | 511 | 3.87 | H.Bond | A | 94-104 H: 1 | 100 | ARG | NH2 | O1 | A | 511 | 2.65 | H.Bond | A | 106-111 S: -1 | 109 | ARG | CZ | O2 | A | 511 | 3.52 | van der Waals | A | 106-111 S: -1 | 109 | ARG | NH1 | O1 | A | 511 | 3.84 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH1 | O2 | A | 511 | 3.66 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH2 | C1 | A | 511 | 3.57 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH2 | O1 | A | 511 | 3.87 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH2 | O2 | A | 511 | 2.55 | H.Bond | A | 136-141 H: 5 | 139 | TYR | OH | C2 | A | 511 | 3.74 | van der Waals | A | 136-141 H: 5 | 139 | TYR | OH | C3 | A | 511 | 3.17 | van der Waals | A | 136-141 H: 5 | 139 | TYR | OH | C4 | A | 511 | 3.52 | van der Waals | A | 136-141 H: 5 | 139 | TYR | OH | C5 | A | 511 | 3.9 | van der Waals | A | 136-141 H: 5 | 139 | TYR | OH | O4 | A | 511 | 3.86 | H.Bond | A | 270-286 H: 1 | 275 | ASP | CG | C1 | A | 511 | 3.67 | van der Waals | A | 270-286 H: 1 | 275 | ASP | CG | O2 | A | 511 | 3.38 | van der Waals | A | 270-286 H: 1 | 275 | ASP | CG | C2 | A | 511 | 3.76 | van der Waals | A | 270-286 H: 1 | 275 | ASP | CG | O5 | A | 511 | 3.66 | van der Waals | A | 270-286 H: 1 | 275 | ASP | OD1 | C1 | A | 511 | 3.32 | van der Waals | A | 270-286 H: 1 | 275 | ASP | OD1 | O2 | A | 511 | 2.76 | H.Bond | A | 270-286 H: 1 | 275 | ASP | OD1 | C2 | A | 511 | 3.41 | van der Waals | A | 270-286 H: 1 | 275 | ASP | OD1 | O5 | A | 511 | 3.04 | H.Bond | A | 270-286 H: 1 | 275 | ASP | OD2 | C1 | A | 511 | 3.74 | van der Waals | A | 270-286 H: 1 | 275 | ASP | OD2 | O2 | A | 511 | 3.86 | H.Bond | A | 270-286 H: 1 | 275 | ASP | OD2 | C2 | A | 511 | 3.51 | van der Waals | A | 270-286 H: 1 | 275 | ASP | OD2 | O5 | A | 511 | 3.54 | H.Bond | A | No SSE | 308 | ALA | O | O2 | A | 511 | 3.9 | H.Bond | A | Water | 431 | HOH | O | O3 | A | 511 | 2.43 | H.Bond | |
| 2 / B |
> Structure: SHHLLH
+1w
> Sequence: TSNRRYDA
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AKG /(511) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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B | No SSE | 77 | THR | CB | O3 | B | 511 | 3.19 | van der Waals | B | No SSE | 77 | THR | OG1 | C5 | B | 511 | 3.3 | van der Waals | B | No SSE | 77 | THR | OG1 | O3 | B | 511 | 2.58 | H.Bond | B | No SSE | 77 | THR | OG1 | O4 | B | 511 | 3.38 | H.Bond | B | No SSE | 77 | THR | CG2 | O3 | B | 511 | 3.84 | van der Waals | B | 94-104 H: 1 | 94 | SER | CB | O4 | B | 511 | 3.47 | van der Waals | B | 94-104 H: 1 | 94 | SER | OG | C5 | B | 511 | 3.67 | van der Waals | B | 94-104 H: 1 | 94 | SER | OG | O4 | B | 511 | 2.62 | H.Bond | B | 94-104 H: 1 | 96 | ASN | CB | O4 | B | 511 | 3.92 | van der Waals | B | 94-104 H: 1 | 96 | ASN | CG | O4 | B | 511 | 3.93 | van der Waals | B | 94-104 H: 1 | 96 | ASN | ND2 | C3 | B | 511 | 3.9 | H.Bond | B | 94-104 H: 1 | 96 | ASN | ND2 | C5 | B | 511 | 3.9 | H.Bond | B | 94-104 H: 1 | 96 | ASN | ND2 | O4 | B | 511 | 3.01 | H.Bond | B | 94-104 H: 1 | 100 | ARG | CZ | O1 | B | 511 | 3.37 | van der Waals | B | 94-104 H: 1 | 100 | ARG | NH1 | O1 | B | 511 | 3.27 | H.Bond | B | 94-104 H: 1 | 100 | ARG | NH2 | C1 | B | 511 | 3.88 | H.Bond | B | 94-104 H: 1 | 100 | ARG | NH2 | O1 | B | 511 | 2.65 | H.Bond | B | 106-111 S: -1 | 109 | ARG | CZ | O2 | B | 511 | 3.47 | van der Waals | B | 106-111 S: -1 | 109 | ARG | NH1 | O1 | B | 511 | 3.68 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH1 | O2 | B | 511 | 3.52 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH2 | C1 | B | 511 | 3.68 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH2 | O2 | B | 511 | 2.6 | H.Bond | B | 136-141 H: 5 | 139 | TYR | CE2 | O4 | B | 511 | 3.97 | van der Waals | B | 136-141 H: 5 | 139 | TYR | OH | C2 | B | 511 | 3.78 | van der Waals | B | 136-141 H: 5 | 139 | TYR | OH | C3 | B | 511 | 3.19 | van der Waals | B | 136-141 H: 5 | 139 | TYR | OH | C4 | B | 511 | 3.54 | van der Waals | B | 136-141 H: 5 | 139 | TYR | OH | C5 | B | 511 | 3.81 | van der Waals | B | 136-141 H: 5 | 139 | TYR | OH | O4 | B | 511 | 3.79 | H.Bond | B | 270-286 H: 1 | 275 | ASP | CG | O2 | B | 511 | 3.8 | van der Waals | B | 270-286 H: 1 | 275 | ASP | CG | O5 | B | 511 | 3.79 | van der Waals | B | 270-286 H: 1 | 275 | ASP | OD1 | C1 | B | 511 | 3.87 | van der Waals | B | 270-286 H: 1 | 275 | ASP | OD1 | O2 | B | 511 | 3.36 | H.Bond | B | 270-286 H: 1 | 275 | ASP | OD1 | C2 | B | 511 | 3.81 | van der Waals | B | 270-286 H: 1 | 275 | ASP | OD1 | O5 | B | 511 | 3.31 | H.Bond | B | 270-286 H: 1 | 275 | ASP | OD2 | C2 | B | 511 | 3.68 | van der Waals | B | 270-286 H: 1 | 275 | ASP | OD2 | O5 | B | 511 | 3.6 | H.Bond | B | No SSE | 308 | ALA | O | C1 | B | 511 | 3.97 | van der Waals | B | No SSE | 308 | ALA | O | O2 | B | 511 | 3.65 | H.Bond | B | Water | 431 | HOH | O | O3 | B | 511 | 2.44 | H.Bond | |
| 3 / C |
> Structure: SHHLLH
+1w
> Sequence: TSNRRYDA
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AKG /(511) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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C | No SSE | 77 | THR | CB | O3 | C | 511 | 3.19 | van der Waals | C | No SSE | 77 | THR | OG1 | C5 | C | 511 | 3.23 | van der Waals | C | No SSE | 77 | THR | OG1 | O3 | C | 511 | 2.47 | H.Bond | C | No SSE | 77 | THR | OG1 | O4 | C | 511 | 3.34 | H.Bond | C | No SSE | 77 | THR | CG2 | O3 | C | 511 | 3.78 | van der Waals | C | 94-104 H: 1 | 94 | SER | CB | C5 | C | 511 | 3.9 | van der Waals | C | 94-104 H: 1 | 94 | SER | CB | O3 | C | 511 | 3.84 | van der Waals | C | 94-104 H: 1 | 94 | SER | CB | O4 | C | 511 | 3.25 | van der Waals | C | 94-104 H: 1 | 94 | SER | OG | C5 | C | 511 | 3.63 | van der Waals | C | 94-104 H: 1 | 94 | SER | OG | O4 | C | 511 | 2.61 | H.Bond | C | 94-104 H: 1 | 96 | ASN | CB | O4 | C | 511 | 3.88 | van der Waals | C | 94-104 H: 1 | 96 | ASN | CG | O4 | C | 511 | 3.88 | van der Waals | C | 94-104 H: 1 | 96 | ASN | ND2 | C3 | C | 511 | 3.58 | H.Bond | C | 94-104 H: 1 | 96 | ASN | ND2 | C5 | C | 511 | 3.94 | H.Bond | C | 94-104 H: 1 | 96 | ASN | ND2 | O4 | C | 511 | 2.95 | H.Bond | C | 94-104 H: 1 | 100 | ARG | CZ | O1 | C | 511 | 2.92 | van der Waals | C | 94-104 H: 1 | 100 | ARG | NH1 | C1 | C | 511 | 3.72 | H.Bond | C | 94-104 H: 1 | 100 | ARG | NH1 | O1 | C | 511 | 2.64 | H.Bond | C | 94-104 H: 1 | 100 | ARG | NH2 | C1 | C | 511 | 3.57 | H.Bond | C | 94-104 H: 1 | 100 | ARG | NH2 | O1 | C | 511 | 2.45 | H.Bond | C | 106-111 S: -1 | 109 | ARG | CZ | O2 | C | 511 | 3.53 | van der Waals | C | 106-111 S: -1 | 109 | ARG | NH1 | O2 | C | 511 | 3.52 | H.Bond | C | 106-111 S: -1 | 109 | ARG | NH2 | C1 | C | 511 | 3.82 | H.Bond | C | 106-111 S: -1 | 109 | ARG | NH2 | O2 | C | 511 | 2.71 | H.Bond | C | 136-141 H: 5 | 139 | TYR | OH | C1 | C | 511 | 3.92 | van der Waals | C | 136-141 H: 5 | 139 | TYR | OH | O1 | C | 511 | 3.78 | H.Bond | C | 136-141 H: 5 | 139 | TYR | OH | C2 | C | 511 | 3.61 | van der Waals | C | 136-141 H: 5 | 139 | TYR | OH | C3 | C | 511 | 3.58 | van der Waals | C | 136-141 H: 5 | 139 | TYR | OH | C4 | C | 511 | 3.5 | van der Waals | C | 136-141 H: 5 | 139 | TYR | OH | C5 | C | 511 | 3.92 | van der Waals | C | 136-141 H: 5 | 139 | TYR | OH | O4 | C | 511 | 3.98 | H.Bond | C | 270-286 H: 1 | 275 | ASP | CG | O2 | C | 511 | 3.91 | van der Waals | C | 270-286 H: 1 | 275 | ASP | CG | O5 | C | 511 | 3.82 | van der Waals | C | 270-286 H: 1 | 275 | ASP | OD1 | C1 | C | 511 | 3.89 | van der Waals | C | 270-286 H: 1 | 275 | ASP | OD1 | O2 | C | 511 | 3.46 | H.Bond | C | 270-286 H: 1 | 275 | ASP | OD1 | C2 | C | 511 | 3.9 | van der Waals | C | 270-286 H: 1 | 275 | ASP | OD1 | O5 | C | 511 | 3.25 | H.Bond | C | 270-286 H: 1 | 275 | ASP | OD2 | C2 | C | 511 | 3.98 | van der Waals | C | 270-286 H: 1 | 275 | ASP | OD2 | O5 | C | 511 | 3.7 | H.Bond | C | No SSE | 308 | ALA | O | O2 | C | 511 | 3.85 | H.Bond | C | Water | 431 | HOH | O | O3 | C | 511 | 2.47 | H.Bond | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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6 | 4L06 | alpha-Ketoglutarate dehydrogenase | X-RAY | 2.28 | 0.227
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| Motif No./Chain | Mode | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: SSHLLH
+1w
> Sequence: TSNRRRDA
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AKG /(503) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | No SSE | 77 | THR | CB | O4 | A | 503 | 3.25 | van der Waals | A | No SSE | 77 | THR | OG1 | C5 | A | 503 | 3.45 | van der Waals | A | No SSE | 77 | THR | OG1 | O3 | A | 503 | 3.51 | H.Bond | A | No SSE | 77 | THR | OG1 | O4 | A | 503 | 2.64 | H.Bond | A | No SSE | 77 | THR | CG2 | O4 | A | 503 | 3.89 | van der Waals | A | 94-104 H: 1 | 94 | SER | CB | O3 | A | 503 | 3.54 | van der Waals | A | 94-104 H: 1 | 94 | SER | CB | O4 | A | 503 | 3.96 | van der Waals | A | 94-104 H: 1 | 94 | SER | OG | C5 | A | 503 | 3.22 | van der Waals | A | 94-104 H: 1 | 94 | SER | OG | O3 | A | 503 | 2.38 | H.Bond | A | 94-104 H: 1 | 94 | SER | OG | O4 | A | 503 | 3.51 | H.Bond | A | 94-104 H: 1 | 96 | ASN | CB | O3 | A | 503 | 3.55 | van der Waals | A | 94-104 H: 1 | 96 | ASN | CG | O3 | A | 503 | 3.78 | van der Waals | A | 94-104 H: 1 | 96 | ASN | OD1 | O3 | A | 503 | 3.18 | H.Bond | A | 94-104 H: 1 | 100 | ARG | CZ | O1 | A | 503 | 3.67 | van der Waals | A | 94-104 H: 1 | 100 | ARG | NH1 | O1 | A | 503 | 3.94 | H.Bond | A | 94-104 H: 1 | 100 | ARG | NH2 | C1 | A | 503 | 3.79 | H.Bond | A | 94-104 H: 1 | 100 | ARG | NH2 | O1 | A | 503 | 2.65 | H.Bond | A | 106-111 S: -1 | 109 | ARG | CZ | O1 | A | 503 | 3.9 | van der Waals | A | 106-111 S: -1 | 109 | ARG | CZ | O2 | A | 503 | 3.51 | van der Waals | A | 106-111 S: -1 | 109 | ARG | NH1 | C1 | A | 503 | 3.82 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH1 | O1 | A | 503 | 3.98 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH1 | O2 | A | 503 | 2.86 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH2 | C1 | A | 503 | 3.54 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH2 | O1 | A | 503 | 2.95 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH2 | O2 | A | 503 | 3.31 | H.Bond | A | 128-133 S: -1 | 132 | ARG | NH1 | C1 | A | 503 | 3.63 | H.Bond | A | 128-133 S: -1 | 132 | ARG | NH1 | O1 | A | 503 | 3.69 | H.Bond | A | 128-133 S: -1 | 132 | ARG | NH1 | O2 | A | 503 | 3.27 | H.Bond | A | 270-285 H: 1 | 275 | ASP | CG | O2 | A | 503 | 3.59 | van der Waals | A | 270-285 H: 1 | 275 | ASP | CG | O5 | A | 503 | 3.92 | van der Waals | A | 270-285 H: 1 | 275 | ASP | OD1 | C1 | A | 503 | 3.42 | van der Waals | A | 270-285 H: 1 | 275 | ASP | OD1 | O2 | A | 503 | 2.65 | H.Bond | A | 270-285 H: 1 | 275 | ASP | OD1 | C2 | A | 503 | 3.57 | van der Waals | A | 270-285 H: 1 | 275 | ASP | OD1 | O5 | A | 503 | 3.19 | H.Bond | A | 270-285 H: 1 | 275 | ASP | OD2 | O5 | A | 503 | 3.86 | H.Bond | A | No SSE | 308 | ALA | O | C1 | A | 503 | 3.94 | van der Waals | A | No SSE | 308 | ALA | O | O2 | A | 503 | 3.83 | H.Bond | A | Water | 607 | HOH | O | O4 | A | 503 | 2.54 | H.Bond | |
| 2 / B |
> Structure: SSHLLH
> Sequence: TSNRRRDA
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AKG /(503) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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B | No SSE | 77 | THR | CB | O4 | B | 503 | 3.52 | van der Waals | B | No SSE | 77 | THR | OG1 | C5 | B | 503 | 3.69 | van der Waals | B | No SSE | 77 | THR | OG1 | O3 | B | 503 | 3.73 | H.Bond | B | No SSE | 77 | THR | OG1 | O4 | B | 503 | 2.89 | H.Bond | B | 94-104 H: 1 | 94 | SER | CB | O3 | B | 503 | 3.65 | van der Waals | B | 94-104 H: 1 | 94 | SER | OG | C5 | B | 503 | 3.31 | van der Waals | B | 94-104 H: 1 | 94 | SER | OG | O3 | B | 503 | 2.46 | H.Bond | B | 94-104 H: 1 | 94 | SER | OG | O4 | B | 503 | 3.51 | H.Bond | B | 94-104 H: 1 | 96 | ASN | CB | O3 | B | 503 | 3.62 | van der Waals | B | 94-104 H: 1 | 96 | ASN | CG | O3 | B | 503 | 3.67 | van der Waals | B | 94-104 H: 1 | 96 | ASN | ND2 | C5 | B | 503 | 3.92 | H.Bond | B | 94-104 H: 1 | 96 | ASN | ND2 | O3 | B | 503 | 2.89 | H.Bond | B | 94-104 H: 1 | 100 | ARG | CZ | O1 | B | 503 | 3.6 | van der Waals | B | 94-104 H: 1 | 100 | ARG | NH1 | O1 | B | 503 | 3.9 | H.Bond | B | 94-104 H: 1 | 100 | ARG | NH2 | C1 | B | 503 | 3.79 | H.Bond | B | 94-104 H: 1 | 100 | ARG | NH2 | O1 | B | 503 | 2.75 | H.Bond | B | 106-111 S: -1 | 109 | ARG | CZ | O2 | B | 503 | 3.46 | van der Waals | B | 106-111 S: -1 | 109 | ARG | NH1 | C1 | B | 503 | 3.88 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH1 | O1 | B | 503 | 3.95 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH1 | O2 | B | 503 | 3 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH2 | C1 | B | 503 | 3.58 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH2 | O1 | B | 503 | 3.31 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH2 | O2 | B | 503 | 3.14 | H.Bond | B | 128-133 S: -1 | 132 | ARG | CZ | O1 | B | 503 | 3.6 | van der Waals | B | 128-133 S: -1 | 132 | ARG | NH1 | C1 | B | 503 | 3.54 | H.Bond | B | 128-133 S: -1 | 132 | ARG | NH1 | O1 | B | 503 | 2.58 | H.Bond | B | 128-133 S: -1 | 132 | ARG | NH1 | O2 | B | 503 | 3.85 | H.Bond | B | 128-133 S: -1 | 132 | ARG | NH2 | O1 | B | 503 | 3.83 | H.Bond | B | 270-285 H: 1 | 275 | ASP | CG | C1 | B | 503 | 3.77 | van der Waals | B | 270-285 H: 1 | 275 | ASP | CG | O1 | B | 503 | 3.94 | van der Waals | B | 270-285 H: 1 | 275 | ASP | CG | O2 | B | 503 | 3.95 | van der Waals | B | 270-285 H: 1 | 275 | ASP | OD1 | C1 | B | 503 | 3.03 | van der Waals | B | 270-285 H: 1 | 275 | ASP | OD1 | O1 | B | 503 | 3.53 | H.Bond | B | 270-285 H: 1 | 275 | ASP | OD1 | O2 | B | 503 | 2.94 | H.Bond | B | 270-285 H: 1 | 275 | ASP | OD1 | C2 | B | 503 | 3.43 | van der Waals | B | 270-285 H: 1 | 275 | ASP | OD1 | O5 | B | 503 | 3.37 | H.Bond | B | No SSE | 308 | ALA | O | O2 | B | 503 | 3.5 | H.Bond | |
| 3 / C |
> Structure: SSHLLH
> Sequence: TSNRRRDA
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AKG /(503) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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C | No SSE | 77 | THR | CB | O4 | C | 503 | 3.4 | van der Waals | C | No SSE | 77 | THR | OG1 | C5 | C | 503 | 3.49 | van der Waals | C | No SSE | 77 | THR | OG1 | O3 | C | 503 | 3.59 | H.Bond | C | No SSE | 77 | THR | OG1 | O4 | C | 503 | 2.74 | H.Bond | C | No SSE | 77 | THR | CG2 | O4 | C | 503 | 3.91 | van der Waals | C | 94-104 H: 1 | 94 | SER | CB | O3 | C | 503 | 3.55 | van der Waals | C | 94-104 H: 1 | 94 | SER | CB | O4 | C | 503 | 3.79 | van der Waals | C | 94-104 H: 1 | 94 | SER | OG | C5 | C | 503 | 3.68 | van der Waals | C | 94-104 H: 1 | 94 | SER | OG | O3 | C | 503 | 2.84 | H.Bond | C | 94-104 H: 1 | 94 | SER | OG | O4 | C | 503 | 3.9 | H.Bond | C | 94-104 H: 1 | 96 | ASN | CB | O3 | C | 503 | 3.52 | van der Waals | C | 94-104 H: 1 | 96 | ASN | CG | O3 | C | 503 | 3.51 | van der Waals | C | 94-104 H: 1 | 96 | ASN | ND2 | C3 | C | 503 | 3.68 | H.Bond | C | 94-104 H: 1 | 96 | ASN | ND2 | C5 | C | 503 | 3.65 | H.Bond | C | 94-104 H: 1 | 96 | ASN | ND2 | O3 | C | 503 | 2.6 | H.Bond | C | 94-104 H: 1 | 100 | ARG | CZ | O1 | C | 503 | 3.51 | van der Waals | C | 94-104 H: 1 | 100 | ARG | NH1 | O1 | C | 503 | 3.8 | H.Bond | C | 94-104 H: 1 | 100 | ARG | NH2 | C1 | C | 503 | 3.69 | H.Bond | C | 94-104 H: 1 | 100 | ARG | NH2 | O1 | C | 503 | 2.47 | H.Bond | C | 106-111 S: -1 | 109 | ARG | CZ | O1 | C | 503 | 3.97 | van der Waals | C | 106-111 S: -1 | 109 | ARG | CZ | O2 | C | 503 | 3.51 | van der Waals | C | 106-111 S: -1 | 109 | ARG | NH1 | O2 | C | 503 | 3.14 | H.Bond | C | 106-111 S: -1 | 109 | ARG | NH2 | C1 | C | 503 | 3.44 | H.Bond | C | 106-111 S: -1 | 109 | ARG | NH2 | O1 | C | 503 | 2.91 | H.Bond | C | 106-111 S: -1 | 109 | ARG | NH2 | O2 | C | 503 | 3.16 | H.Bond | C | 129-133 S: -1 | 132 | ARG | NH1 | C1 | C | 503 | 3.9 | H.Bond | C | 129-133 S: -1 | 132 | ARG | NH1 | O1 | C | 503 | 3.48 | H.Bond | C | 129-133 S: -1 | 132 | ARG | NH1 | O2 | C | 503 | 3.98 | H.Bond | C | 270-285 H: 1 | 275 | ASP | CG | C1 | C | 503 | 3.96 | van der Waals | C | 270-285 H: 1 | 275 | ASP | CG | O2 | C | 503 | 3.68 | van der Waals | C | 270-285 H: 1 | 275 | ASP | CG | O5 | C | 503 | 3.88 | van der Waals | C | 270-285 H: 1 | 275 | ASP | OD1 | C1 | C | 503 | 3.39 | van der Waals | C | 270-285 H: 1 | 275 | ASP | OD1 | O2 | C | 503 | 2.81 | H.Bond | C | 270-285 H: 1 | 275 | ASP | OD1 | C2 | C | 503 | 3.6 | van der Waals | C | 270-285 H: 1 | 275 | ASP | OD1 | O5 | C | 503 | 3.28 | H.Bond | C | 270-285 H: 1 | 275 | ASP | OD2 | C2 | C | 503 | 3.81 | van der Waals | C | 270-285 H: 1 | 275 | ASP | OD2 | O5 | C | 503 | 3.65 | H.Bond | C | No SSE | 308 | ALA | O | C1 | C | 503 | 3.95 | van der Waals | C | No SSE | 308 | ALA | O | O2 | C | 503 | 3.6 | H.Bond | |
| 4 / D |
> Structure: SSHLLH
> Sequence: TSNRRRDA
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AKG /(503) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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D | No SSE | 77 | THR | CB | O4 | D | 503 | 3.48 | van der Waals | D | No SSE | 77 | THR | OG1 | C5 | D | 503 | 3.92 | van der Waals | D | No SSE | 77 | THR | OG1 | O3 | D | 503 | 3.84 | H.Bond | D | No SSE | 77 | THR | OG1 | O4 | D | 503 | 3.19 | H.Bond | D | 94-104 H: 1 | 94 | SER | OG | C5 | D | 503 | 3.82 | van der Waals | D | 94-104 H: 1 | 94 | SER | OG | O3 | D | 503 | 2.88 | H.Bond | D | 94-104 H: 1 | 96 | ASN | CB | O3 | D | 503 | 3.97 | van der Waals | D | 94-104 H: 1 | 96 | ASN | CG | O3 | D | 503 | 3.9 | van der Waals | D | 94-104 H: 1 | 96 | ASN | OD1 | O3 | D | 503 | 3.09 | H.Bond | D | 94-104 H: 1 | 100 | ARG | CZ | O1 | D | 503 | 3.63 | van der Waals | D | 94-104 H: 1 | 100 | ARG | NH1 | O1 | D | 503 | 3.54 | H.Bond | D | 94-104 H: 1 | 100 | ARG | NH2 | O1 | D | 503 | 2.94 | H.Bond | D | 106-111 S: -1 | 109 | ARG | CZ | O1 | D | 503 | 3.99 | van der Waals | D | 106-111 S: -1 | 109 | ARG | CZ | O2 | D | 503 | 3.57 | van der Waals | D | 106-111 S: -1 | 109 | ARG | NH1 | C1 | D | 503 | 3.94 | H.Bond | D | 106-111 S: -1 | 109 | ARG | NH1 | O2 | D | 503 | 2.97 | H.Bond | D | 106-111 S: -1 | 109 | ARG | NH2 | C1 | D | 503 | 3.55 | H.Bond | D | 106-111 S: -1 | 109 | ARG | NH2 | O1 | D | 503 | 2.99 | H.Bond | D | 106-111 S: -1 | 109 | ARG | NH2 | O2 | D | 503 | 3.29 | H.Bond | D | 128-133 S: -1 | 132 | ARG | NH1 | C1 | D | 503 | 3.73 | H.Bond | D | 128-133 S: -1 | 132 | ARG | NH1 | O1 | D | 503 | 3.26 | H.Bond | D | 128-133 S: -1 | 132 | ARG | NH1 | O2 | D | 503 | 3.89 | H.Bond | D | 270-285 H: 1 | 275 | ASP | CG | C1 | D | 503 | 3.76 | van der Waals | D | 270-285 H: 1 | 275 | ASP | CG | O2 | D | 503 | 3.64 | van der Waals | D | 270-285 H: 1 | 275 | ASP | CG | C2 | D | 503 | 3.83 | van der Waals | D | 270-285 H: 1 | 275 | ASP | CG | O5 | D | 503 | 3.83 | van der Waals | D | 270-285 H: 1 | 275 | ASP | OD1 | C1 | D | 503 | 3.18 | van der Waals | D | 270-285 H: 1 | 275 | ASP | OD1 | O2 | D | 503 | 2.74 | H.Bond | D | 270-285 H: 1 | 275 | ASP | OD1 | C2 | D | 503 | 3.39 | van der Waals | D | 270-285 H: 1 | 275 | ASP | OD1 | O5 | D | 503 | 3.22 | H.Bond | D | 270-285 H: 1 | 275 | ASP | OD2 | C1 | D | 503 | 3.84 | van der Waals | D | 270-285 H: 1 | 275 | ASP | OD2 | C2 | D | 503 | 3.54 | van der Waals | D | 270-285 H: 1 | 275 | ASP | OD2 | O5 | D | 503 | 3.6 | H.Bond | D | No SSE | 308 | ALA | O | C1 | D | 503 | 3.81 | van der Waals | D | No SSE | 308 | ALA | O | O2 | D | 503 | 3.38 | H.Bond | |
| 5 / E |
> Structure: SSHLLH
> Sequence: TSNRRRDA
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AKG /(503) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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E | No SSE | 77 | THR | CB | O4 | E | 503 | 3.2 | van der Waals | E | No SSE | 77 | THR | OG1 | C5 | E | 503 | 3.43 | van der Waals | E | No SSE | 77 | THR | OG1 | O3 | E | 503 | 3.63 | H.Bond | E | No SSE | 77 | THR | OG1 | O4 | E | 503 | 2.51 | H.Bond | E | No SSE | 77 | THR | CG2 | O4 | E | 503 | 3.87 | van der Waals | E | 94-104 H: 1 | 94 | SER | CB | C5 | E | 503 | 3.98 | van der Waals | E | 94-104 H: 1 | 94 | SER | CB | O3 | E | 503 | 3.4 | van der Waals | E | 94-104 H: 1 | 94 | SER | CB | O4 | E | 503 | 3.85 | van der Waals | E | 94-104 H: 1 | 94 | SER | OG | C5 | E | 503 | 3.92 | van der Waals | E | 94-104 H: 1 | 94 | SER | OG | O3 | E | 503 | 2.96 | H.Bond | E | 94-104 H: 1 | 96 | ASN | CB | O3 | E | 503 | 3.5 | van der Waals | E | 94-104 H: 1 | 96 | ASN | CG | O3 | E | 503 | 3.81 | van der Waals | E | 94-104 H: 1 | 96 | ASN | OD1 | O3 | E | 503 | 3.28 | H.Bond | E | 94-104 H: 1 | 100 | ARG | CZ | O1 | E | 503 | 3.65 | van der Waals | E | 94-104 H: 1 | 100 | ARG | NH2 | C1 | E | 503 | 3.86 | H.Bond | E | 94-104 H: 1 | 100 | ARG | NH2 | O1 | E | 503 | 2.63 | H.Bond | E | 106-111 S: -1 | 109 | ARG | CZ | O1 | E | 503 | 3.97 | van der Waals | E | 106-111 S: -1 | 109 | ARG | CZ | O2 | E | 503 | 3.7 | van der Waals | E | 106-111 S: -1 | 109 | ARG | NH1 | C1 | E | 503 | 3.8 | H.Bond | E | 106-111 S: -1 | 109 | ARG | NH1 | O1 | E | 503 | 3.86 | H.Bond | E | 106-111 S: -1 | 109 | ARG | NH1 | O2 | E | 503 | 2.94 | H.Bond | E | 106-111 S: -1 | 109 | ARG | NH2 | C1 | E | 503 | 3.81 | H.Bond | E | 106-111 S: -1 | 109 | ARG | NH2 | O1 | E | 503 | 3.18 | H.Bond | E | 106-111 S: -1 | 109 | ARG | NH2 | O2 | E | 503 | 3.6 | H.Bond | E | 128-133 S: -1 | 132 | ARG | NH2 | C1 | E | 503 | 3.45 | H.Bond | E | 128-133 S: -1 | 132 | ARG | NH2 | O1 | E | 503 | 2.91 | H.Bond | E | 128-133 S: -1 | 132 | ARG | NH2 | O2 | E | 503 | 3.77 | H.Bond | E | 270-285 H: 1 | 275 | ASP | CG | O5 | E | 503 | 3.86 | van der Waals | E | 270-285 H: 1 | 275 | ASP | OD1 | C1 | E | 503 | 3.31 | van der Waals | E | 270-285 H: 1 | 275 | ASP | OD1 | O2 | E | 503 | 3.06 | H.Bond | E | 270-285 H: 1 | 275 | ASP | OD1 | C2 | E | 503 | 3.41 | van der Waals | E | 270-285 H: 1 | 275 | ASP | OD1 | O5 | E | 503 | 3.09 | H.Bond | E | 270-285 H: 1 | 275 | ASP | OD2 | C2 | E | 503 | 3.96 | van der Waals | E | 270-285 H: 1 | 275 | ASP | OD2 | O5 | E | 503 | 3.83 | H.Bond | E | No SSE | 308 | ALA | O | C1 | E | 503 | 3.93 | van der Waals | E | No SSE | 308 | ALA | O | O2 | E | 503 | 3.34 | H.Bond | |
| 6 / F |
> Structure: SSHLLH
> Sequence: TSNRRRDA
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AKG /(503) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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F | No SSE | 77 | THR | CB | O4 | F | 503 | 3.13 | van der Waals | F | No SSE | 77 | THR | OG1 | C5 | F | 503 | 3.28 | van der Waals | F | No SSE | 77 | THR | OG1 | O3 | F | 503 | 3.59 | H.Bond | F | No SSE | 77 | THR | OG1 | O4 | F | 503 | 2.36 | H.Bond | F | No SSE | 77 | THR | CG2 | O4 | F | 503 | 3.7 | van der Waals | F | 94-104 H: 1 | 94 | SER | CB | C5 | F | 503 | 3.99 | van der Waals | F | 94-104 H: 1 | 94 | SER | CB | O3 | F | 503 | 3.48 | van der Waals | F | 94-104 H: 1 | 94 | SER | CB | O4 | F | 503 | 3.77 | van der Waals | F | 94-104 H: 1 | 94 | SER | OG | C5 | F | 503 | 3.27 | van der Waals | F | 94-104 H: 1 | 94 | SER | OG | O3 | F | 503 | 2.42 | H.Bond | F | 94-104 H: 1 | 94 | SER | OG | O4 | F | 503 | 3.44 | H.Bond | F | 94-104 H: 1 | 96 | ASN | CB | O3 | F | 503 | 3.76 | van der Waals | F | 94-104 H: 1 | 96 | ASN | CG | O3 | F | 503 | 3.71 | van der Waals | F | 94-104 H: 1 | 96 | ASN | ND2 | C5 | F | 503 | 3.76 | H.Bond | F | 94-104 H: 1 | 96 | ASN | ND2 | O3 | F | 503 | 2.78 | H.Bond | F | 94-104 H: 1 | 100 | ARG | CZ | O1 | F | 503 | 3.89 | van der Waals | F | 94-104 H: 1 | 100 | ARG | NH2 | O1 | F | 503 | 2.82 | H.Bond | F | 106-111 S: -1 | 109 | ARG | CZ | O1 | F | 503 | 3.97 | van der Waals | F | 106-111 S: -1 | 109 | ARG | CZ | O2 | F | 503 | 3.82 | van der Waals | F | 106-111 S: -1 | 109 | ARG | NH1 | C1 | F | 503 | 3.95 | H.Bond | F | 106-111 S: -1 | 109 | ARG | NH1 | O1 | F | 503 | 3.87 | H.Bond | F | 106-111 S: -1 | 109 | ARG | NH1 | O2 | F | 503 | 3.23 | H.Bond | F | 106-111 S: -1 | 109 | ARG | NH2 | C1 | F | 503 | 3.81 | H.Bond | F | 106-111 S: -1 | 109 | ARG | NH2 | O1 | F | 503 | 3.17 | H.Bond | F | 106-111 S: -1 | 109 | ARG | NH2 | O2 | F | 503 | 3.62 | H.Bond | F | 128-133 S: -1 | 132 | ARG | NH2 | O1 | F | 503 | 3.18 | H.Bond | F | 270-285 H: 1 | 275 | ASP | CG | C1 | F | 503 | 3.9 | van der Waals | F | 270-285 H: 1 | 275 | ASP | OD1 | C1 | F | 503 | 3.03 | van der Waals | F | 270-285 H: 1 | 275 | ASP | OD1 | O1 | F | 503 | 3.56 | H.Bond | F | 270-285 H: 1 | 275 | ASP | OD1 | O2 | F | 503 | 2.9 | H.Bond | F | 270-285 H: 1 | 275 | ASP | OD1 | C2 | F | 503 | 3.44 | van der Waals | F | 270-285 H: 1 | 275 | ASP | OD1 | O5 | F | 503 | 3.41 | H.Bond | F | 270-285 H: 1 | 275 | ASP | OD2 | O5 | F | 503 | 3.99 | H.Bond | F | No SSE | 308 | ALA | O | C1 | F | 503 | 3.91 | van der Waals | F | No SSE | 308 | ALA | O | O2 | F | 503 | 3.17 | H.Bond | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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6 | 4L04 | alpha-Ketoglutarate dehydrogenase | X-RAY | 2.87 | 0.200
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| Motif No./Chain | Mode | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: SSHSLLH
> Sequence: TSNRRRDEA
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AKG /(501) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | No SSE | 77 | THR | CB | O4 | A | 501 | 3.69 | van der Waals | A | No SSE | 77 | THR | OG1 | C5 | A | 501 | 3.87 | van der Waals | A | No SSE | 77 | THR | OG1 | O3 | A | 501 | 3.96 | H.Bond | A | No SSE | 77 | THR | OG1 | O4 | A | 501 | 3.2 | H.Bond | A | 94-104 H: 1 | 94 | SER | CB | O3 | A | 501 | 3.33 | van der Waals | A | 94-104 H: 1 | 94 | SER | OG | C5 | A | 501 | 3.92 | van der Waals | A | 94-104 H: 1 | 94 | SER | OG | O3 | A | 501 | 2.8 | H.Bond | A | 94-104 H: 1 | 96 | ASN | CB | O3 | A | 501 | 3.59 | van der Waals | A | 94-104 H: 1 | 96 | ASN | OD1 | O3 | A | 501 | 3.77 | H.Bond | A | 94-104 H: 1 | 100 | ARG | CZ | O1 | A | 501 | 3.82 | van der Waals | A | 94-104 H: 1 | 100 | ARG | NH1 | O1 | A | 501 | 3.94 | H.Bond | A | 94-104 H: 1 | 100 | ARG | NH2 | C1 | A | 501 | 3.83 | H.Bond | A | 94-104 H: 1 | 100 | ARG | NH2 | O1 | A | 501 | 2.82 | H.Bond | A | 106-111 S: -1 | 109 | ARG | CZ | O2 | A | 501 | 3.24 | van der Waals | A | 106-111 S: -1 | 109 | ARG | NH1 | C1 | A | 501 | 3.88 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH1 | O2 | A | 501 | 2.81 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH2 | C1 | A | 501 | 3.34 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH2 | O1 | A | 501 | 3.09 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH2 | O2 | A | 501 | 2.83 | H.Bond | A | 128-133 S: -1 | 132 | ARG | NH1 | C1 | A | 501 | 3.68 | H.Bond | A | 128-133 S: -1 | 132 | ARG | NH1 | O2 | A | 501 | 3.1 | H.Bond | A | 270-286 H: 1 | 275 | ASP | CG | O2 | A | 501 | 3.88 | van der Waals | A | 270-286 H: 1 | 275 | ASP | OD1 | C1 | A | 501 | 3.84 | van der Waals | A | 270-286 H: 1 | 275 | ASP | OD1 | O2 | A | 501 | 3.3 | H.Bond | A | 270-286 H: 1 | 275 | ASP | OD1 | C2 | A | 501 | 3.52 | van der Waals | A | 270-286 H: 1 | 275 | ASP | OD1 | O5 | A | 501 | 3.38 | H.Bond | A | 270-286 H: 1 | 275 | ASP | OD2 | C3 | A | 501 | 3.87 | van der Waals | A | 303-307 S: 1 | 306 | GLU | OE2 | O1 | A | 501 | 3.95 | H.Bond | A | No SSE | 308 | ALA | O | C1 | A | 501 | 3.94 | van der Waals | A | No SSE | 308 | ALA | O | O2 | A | 501 | 3.85 | H.Bond | |
| 2 / B |
> Structure: SSHLLH
+1w
> Sequence: TSNRRRDA
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AKG /(501) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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B | No SSE | 77 | THR | CB | O4 | B | 501 | 3.19 | van der Waals | B | No SSE | 77 | THR | OG1 | C5 | B | 501 | 3.42 | van der Waals | B | No SSE | 77 | THR | OG1 | O3 | B | 501 | 3.62 | H.Bond | B | No SSE | 77 | THR | OG1 | O4 | B | 501 | 2.71 | H.Bond | B | No SSE | 77 | THR | CG2 | O4 | B | 501 | 3.69 | van der Waals | B | 94-104 H: 1 | 94 | SER | CB | O3 | B | 501 | 3.36 | van der Waals | B | 94-104 H: 1 | 94 | SER | CB | O4 | B | 501 | 3.99 | van der Waals | B | 94-104 H: 1 | 94 | SER | OG | C5 | B | 501 | 3.64 | van der Waals | B | 94-104 H: 1 | 94 | SER | OG | O3 | B | 501 | 2.62 | H.Bond | B | 94-104 H: 1 | 94 | SER | OG | O4 | B | 501 | 3.97 | H.Bond | B | 94-104 H: 1 | 96 | ASN | CB | O3 | B | 501 | 3.83 | van der Waals | B | 94-104 H: 1 | 96 | ASN | CG | O3 | B | 501 | 3.94 | van der Waals | B | 94-104 H: 1 | 96 | ASN | ND2 | C3 | B | 501 | 3.91 | H.Bond | B | 94-104 H: 1 | 96 | ASN | ND2 | C5 | B | 501 | 3.88 | H.Bond | B | 94-104 H: 1 | 96 | ASN | ND2 | O3 | B | 501 | 3.12 | H.Bond | B | 94-104 H: 1 | 100 | ARG | CZ | O1 | B | 501 | 3.42 | van der Waals | B | 94-104 H: 1 | 100 | ARG | NH1 | O1 | B | 501 | 3.22 | H.Bond | B | 94-104 H: 1 | 100 | ARG | NH2 | C1 | B | 501 | 3.96 | H.Bond | B | 94-104 H: 1 | 100 | ARG | NH2 | O1 | B | 501 | 2.75 | H.Bond | B | 106-111 S: -1 | 109 | ARG | CZ | O2 | B | 501 | 3.39 | van der Waals | B | 106-111 S: -1 | 109 | ARG | NH1 | O2 | B | 501 | 3.03 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH2 | C1 | B | 501 | 3.32 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH2 | O1 | B | 501 | 2.94 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH2 | O2 | B | 501 | 2.93 | H.Bond | B | 128-133 S: -1 | 132 | ARG | NH1 | C1 | B | 501 | 3.44 | H.Bond | B | 128-133 S: -1 | 132 | ARG | NH1 | O1 | B | 501 | 3.34 | H.Bond | B | 128-133 S: -1 | 132 | ARG | NH1 | O2 | B | 501 | 3.35 | H.Bond | B | 270-286 H: 1 | 275 | ASP | CG | O2 | B | 501 | 3.89 | van der Waals | B | 270-286 H: 1 | 275 | ASP | CG | O5 | B | 501 | 3.58 | van der Waals | B | 270-286 H: 1 | 275 | ASP | OD1 | C1 | B | 501 | 3.59 | van der Waals | B | 270-286 H: 1 | 275 | ASP | OD1 | O2 | B | 501 | 3 | H.Bond | B | 270-286 H: 1 | 275 | ASP | OD1 | C2 | B | 501 | 3.63 | van der Waals | B | 270-286 H: 1 | 275 | ASP | OD1 | O5 | B | 501 | 2.98 | H.Bond | B | 270-286 H: 1 | 275 | ASP | OD2 | O5 | B | 501 | 3.45 | H.Bond | B | No SSE | 308 | ALA | O | C1 | B | 501 | 3.96 | van der Waals | B | No SSE | 308 | ALA | O | O2 | B | 501 | 3.48 | H.Bond | B | Water | 611 | HOH | O | O2 | B | 501 | 2.81 | H.Bond | |
| 3 / C |
> Structure: SSHLH
> Sequence: TSNRRRD
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AKG /(501) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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C | No SSE | 77 | THR | CB | C5 | C | 501 | 3.96 | van der Waals | C | No SSE | 77 | THR | CB | O3 | C | 501 | 3.76 | van der Waals | C | No SSE | 77 | THR | CB | O4 | C | 501 | 3.38 | van der Waals | C | No SSE | 77 | THR | OG1 | C5 | C | 501 | 3.24 | van der Waals | C | No SSE | 77 | THR | OG1 | O3 | C | 501 | 2.66 | H.Bond | C | No SSE | 77 | THR | OG1 | O4 | C | 501 | 3.11 | H.Bond | C | No SSE | 77 | THR | CG2 | O4 | C | 501 | 3.93 | van der Waals | C | 94-104 H: 1 | 94 | SER | CB | O3 | C | 501 | 3.35 | van der Waals | C | 94-104 H: 1 | 94 | SER | OG | C5 | C | 501 | 3.55 | van der Waals | C | 94-104 H: 1 | 94 | SER | OG | O3 | C | 501 | 2.69 | H.Bond | C | 94-104 H: 1 | 96 | ASN | CB | O3 | C | 501 | 3.99 | van der Waals | C | 94-104 H: 1 | 96 | ASN | OD1 | O3 | C | 501 | 3.52 | H.Bond | C | 94-104 H: 1 | 100 | ARG | CZ | O1 | C | 501 | 3.62 | van der Waals | C | 94-104 H: 1 | 100 | ARG | NH1 | O1 | C | 501 | 3.6 | H.Bond | C | 94-104 H: 1 | 100 | ARG | NH2 | C1 | C | 501 | 3.97 | H.Bond | C | 94-104 H: 1 | 100 | ARG | NH2 | O1 | C | 501 | 2.78 | H.Bond | C | 106-111 S: -1 | 109 | ARG | CZ | O1 | C | 501 | 3.88 | van der Waals | C | 106-111 S: -1 | 109 | ARG | CZ | O2 | C | 501 | 3.61 | van der Waals | C | 106-111 S: -1 | 109 | ARG | NH1 | C1 | C | 501 | 3.94 | H.Bond | C | 106-111 S: -1 | 109 | ARG | NH1 | O2 | C | 501 | 3.03 | H.Bond | C | 106-111 S: -1 | 109 | ARG | NH2 | C1 | C | 501 | 3.44 | H.Bond | C | 106-111 S: -1 | 109 | ARG | NH2 | O1 | C | 501 | 2.86 | H.Bond | C | 106-111 S: -1 | 109 | ARG | NH2 | O2 | C | 501 | 3.27 | H.Bond | C | 128-133 S: -1 | 132 | ARG | NH1 | C1 | C | 501 | 3.57 | H.Bond | C | 128-133 S: -1 | 132 | ARG | NH1 | O1 | C | 501 | 3.62 | H.Bond | C | 128-133 S: -1 | 132 | ARG | NH1 | O2 | C | 501 | 3.08 | H.Bond | C | 270-286 H: 1 | 275 | ASP | CG | O2 | C | 501 | 3.47 | van der Waals | C | 270-286 H: 1 | 275 | ASP | OD1 | O2 | C | 501 | 3.09 | H.Bond | C | 270-286 H: 1 | 275 | ASP | OD1 | O5 | C | 501 | 3.82 | H.Bond | C | 270-286 H: 1 | 275 | ASP | OD2 | O2 | C | 501 | 3.66 | H.Bond | |
| 4 / D |
> Structure: SSHLH
> Sequence: TNRRRD
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AKG /(501) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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D | No SSE | 77 | THR | CB | O4 | D | 501 | 3.4 | van der Waals | D | No SSE | 77 | THR | OG1 | C5 | D | 501 | 3.38 | van der Waals | D | No SSE | 77 | THR | OG1 | O3 | D | 501 | 3.3 | H.Bond | D | No SSE | 77 | THR | OG1 | O4 | D | 501 | 2.83 | H.Bond | D | No SSE | 77 | THR | CG2 | O4 | D | 501 | 3.62 | van der Waals | D | 94-104 H: 1 | 96 | ASN | CB | O3 | D | 501 | 3.81 | van der Waals | D | 94-104 H: 1 | 96 | ASN | CG | O3 | D | 501 | 3.8 | van der Waals | D | 94-104 H: 1 | 96 | ASN | OD1 | O3 | D | 501 | 3.28 | H.Bond | D | 94-104 H: 1 | 100 | ARG | CZ | O1 | D | 501 | 3.84 | van der Waals | D | 94-104 H: 1 | 100 | ARG | NH1 | O1 | D | 501 | 3.85 | H.Bond | D | 94-104 H: 1 | 100 | ARG | NH2 | C1 | D | 501 | 3.79 | H.Bond | D | 94-104 H: 1 | 100 | ARG | NH2 | O1 | D | 501 | 2.94 | H.Bond | D | 106-111 S: -1 | 109 | ARG | CZ | O2 | D | 501 | 3.33 | van der Waals | D | 106-111 S: -1 | 109 | ARG | NH1 | O2 | D | 501 | 3.08 | H.Bond | D | 106-111 S: -1 | 109 | ARG | NH2 | C1 | D | 501 | 3.53 | H.Bond | D | 106-111 S: -1 | 109 | ARG | NH2 | O1 | D | 501 | 3.53 | H.Bond | D | 106-111 S: -1 | 109 | ARG | NH2 | O2 | D | 501 | 2.75 | H.Bond | D | 128-133 S: -1 | 132 | ARG | NH1 | C1 | D | 501 | 3.67 | H.Bond | D | 128-133 S: -1 | 132 | ARG | NH1 | O2 | D | 501 | 3.08 | H.Bond | D | 270-285 H: 1 | 275 | ASP | CG | O2 | D | 501 | 3.97 | van der Waals | D | 270-285 H: 1 | 275 | ASP | CG | C2 | D | 501 | 3.98 | van der Waals | D | 270-285 H: 1 | 275 | ASP | CG | O5 | D | 501 | 3.81 | van der Waals | D | 270-285 H: 1 | 275 | ASP | OD1 | O2 | D | 501 | 3.5 | H.Bond | D | 270-285 H: 1 | 275 | ASP | OD1 | C2 | D | 501 | 3.52 | van der Waals | D | 270-285 H: 1 | 275 | ASP | OD1 | O5 | D | 501 | 3.02 | H.Bond | D | 270-285 H: 1 | 275 | ASP | OD2 | C2 | D | 501 | 3.81 | van der Waals | D | 270-285 H: 1 | 275 | ASP | OD2 | O5 | D | 501 | 3.87 | H.Bond | D | 270-285 H: 1 | 275 | ASP | OD2 | C3 | D | 501 | 3.88 | van der Waals | |
| 5 / E |
> Structure: SSHLLH
> Sequence: TSNRRRDA
|
AKG /(501) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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E | No SSE | 77 | THR | CB | C5 | E | 501 | 3.95 | van der Waals | E | No SSE | 77 | THR | CB | O3 | E | 501 | 3.84 | van der Waals | E | No SSE | 77 | THR | CB | O4 | E | 501 | 3.32 | van der Waals | E | No SSE | 77 | THR | OG1 | C5 | E | 501 | 3.12 | van der Waals | E | No SSE | 77 | THR | OG1 | O3 | E | 501 | 2.73 | H.Bond | E | No SSE | 77 | THR | OG1 | O4 | E | 501 | 2.8 | H.Bond | E | 94-104 H: 1 | 94 | SER | CB | O3 | E | 501 | 3.13 | van der Waals | E | 94-104 H: 1 | 94 | SER | OG | C5 | E | 501 | 3.94 | van der Waals | E | 94-104 H: 1 | 94 | SER | OG | O3 | E | 501 | 2.73 | H.Bond | E | 94-104 H: 1 | 96 | ASN | ND2 | O3 | E | 501 | 3.69 | H.Bond | E | 94-104 H: 1 | 100 | ARG | CZ | O1 | E | 501 | 3.27 | van der Waals | E | 94-104 H: 1 | 100 | ARG | NH1 | O1 | E | 501 | 3.08 | H.Bond | E | 94-104 H: 1 | 100 | ARG | NH2 | C1 | E | 501 | 3.42 | H.Bond | E | 94-104 H: 1 | 100 | ARG | NH2 | O1 | E | 501 | 2.78 | H.Bond | E | 94-104 H: 1 | 100 | ARG | NH2 | O2 | E | 501 | 3.72 | H.Bond | E | 106-111 S: -1 | 109 | ARG | CZ | O2 | E | 501 | 3.4 | van der Waals | E | 106-111 S: -1 | 109 | ARG | NH1 | O2 | E | 501 | 3.16 | H.Bond | E | 106-111 S: -1 | 109 | ARG | NH2 | C1 | E | 501 | 3.68 | H.Bond | E | 106-111 S: -1 | 109 | ARG | NH2 | O1 | E | 501 | 3.82 | H.Bond | E | 106-111 S: -1 | 109 | ARG | NH2 | O2 | E | 501 | 2.79 | H.Bond | E | 128-133 S: -1 | 132 | ARG | CZ | O1 | E | 501 | 3.41 | van der Waals | E | 128-133 S: -1 | 132 | ARG | NH1 | C1 | E | 501 | 3.46 | H.Bond | E | 128-133 S: -1 | 132 | ARG | NH1 | O1 | E | 501 | 2.68 | H.Bond | E | 128-133 S: -1 | 132 | ARG | NH1 | O2 | E | 501 | 3.68 | H.Bond | E | 128-133 S: -1 | 132 | ARG | NH2 | O1 | E | 501 | 3.3 | H.Bond | E | 270-286 H: 1 | 275 | ASP | CG | C1 | E | 501 | 3.97 | van der Waals | E | 270-286 H: 1 | 275 | ASP | CG | O1 | E | 501 | 3.85 | van der Waals | E | 270-286 H: 1 | 275 | ASP | CG | O5 | E | 501 | 3.96 | van der Waals | E | 270-286 H: 1 | 275 | ASP | OD1 | C1 | E | 501 | 3.44 | van der Waals | E | 270-286 H: 1 | 275 | ASP | OD1 | O1 | E | 501 | 3.68 | H.Bond | E | 270-286 H: 1 | 275 | ASP | OD1 | O2 | E | 501 | 3.7 | H.Bond | E | 270-286 H: 1 | 275 | ASP | OD1 | C2 | E | 501 | 3.67 | van der Waals | E | 270-286 H: 1 | 275 | ASP | OD1 | O5 | E | 501 | 3.29 | H.Bond | E | 270-286 H: 1 | 275 | ASP | OD2 | O1 | E | 501 | 3.96 | H.Bond | E | 270-286 H: 1 | 275 | ASP | OD2 | O5 | E | 501 | 3.86 | H.Bond | E | No SSE | 308 | ALA | O | O2 | E | 501 | 3.44 | H.Bond | |
| 6 / F |
> Structure: SSHLLH
> Sequence: TSRRRDA
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AKG /(501) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
---|
F | No SSE | 77 | THR | CB | O4 | F | 501 | 3.32 | van der Waals | F | No SSE | 77 | THR | OG1 | C5 | F | 501 | 3.26 | van der Waals | F | No SSE | 77 | THR | OG1 | O3 | F | 501 | 3.29 | H.Bond | F | No SSE | 77 | THR | OG1 | O4 | F | 501 | 2.74 | H.Bond | F | No SSE | 77 | THR | CG2 | O4 | F | 501 | 3.46 | van der Waals | F | 94-104 H: 1 | 94 | SER | CB | O3 | F | 501 | 3.96 | van der Waals | F | 94-104 H: 1 | 94 | SER | CB | O4 | F | 501 | 3.81 | van der Waals | F | 94-104 H: 1 | 94 | SER | OG | C5 | F | 501 | 3.33 | van der Waals | F | 94-104 H: 1 | 94 | SER | OG | O3 | F | 501 | 2.73 | H.Bond | F | 94-104 H: 1 | 94 | SER | OG | O4 | F | 501 | 3.26 | H.Bond | F | 94-104 H: 1 | 100 | ARG | CZ | O1 | F | 501 | 3.81 | van der Waals | F | 94-104 H: 1 | 100 | ARG | NH1 | O1 | F | 501 | 3.91 | H.Bond | F | 94-104 H: 1 | 100 | ARG | NH2 | C1 | F | 501 | 3.87 | H.Bond | F | 94-104 H: 1 | 100 | ARG | NH2 | O1 | F | 501 | 2.84 | H.Bond | F | 106-111 S: -1 | 109 | ARG | CZ | O2 | F | 501 | 3.28 | van der Waals | F | 106-111 S: -1 | 109 | ARG | NH1 | O2 | F | 501 | 2.91 | H.Bond | F | 106-111 S: -1 | 109 | ARG | NH2 | C1 | F | 501 | 3.46 | H.Bond | F | 106-111 S: -1 | 109 | ARG | NH2 | O1 | F | 501 | 3.29 | H.Bond | F | 106-111 S: -1 | 109 | ARG | NH2 | O2 | F | 501 | 2.81 | H.Bond | F | 129-133 S: -1 | 132 | ARG | NH2 | C1 | F | 501 | 3.28 | H.Bond | F | 129-133 S: -1 | 132 | ARG | NH2 | O1 | F | 501 | 3.5 | H.Bond | F | 129-133 S: -1 | 132 | ARG | NH2 | O2 | F | 501 | 3.19 | H.Bond | F | 129-133 S: -1 | 132 | ARG | NH2 | C2 | F | 501 | 3.93 | H.Bond | F | 270-286 H: 1 | 275 | ASP | CG | C2 | F | 501 | 3.87 | van der Waals | F | 270-286 H: 1 | 275 | ASP | CG | O5 | F | 501 | 3.74 | van der Waals | F | 270-286 H: 1 | 275 | ASP | OD1 | C2 | F | 501 | 3.66 | van der Waals | F | 270-286 H: 1 | 275 | ASP | OD1 | O5 | F | 501 | 3.15 | H.Bond | F | 270-286 H: 1 | 275 | ASP | OD2 | C1 | F | 501 | 3.88 | van der Waals | F | 270-286 H: 1 | 275 | ASP | OD2 | C2 | F | 501 | 3.43 | van der Waals | F | 270-286 H: 1 | 275 | ASP | OD2 | O5 | F | 501 | 3.64 | H.Bond | F | 270-286 H: 1 | 275 | ASP | OD2 | C3 | F | 501 | 3.54 | van der Waals | F | No SSE | 308 | ALA | O | O2 | F | 501 | 3.68 | H.Bond | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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3 | 4L03 | alpha-Ketoglutarate dehydrogenase | X-RAY | 2.10 | 0.189
|
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| Motif No./Chain | Mode | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: SSHLLH
+2w
> Sequence: TSNRRRDA
|
AKG /(504) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | No SSE | 77 | THR | CB | O4 | A | 504 | 3.24 | van der Waals | A | No SSE | 77 | THR | OG1 | C5 | A | 504 | 3.41 | van der Waals | A | No SSE | 77 | THR | OG1 | O3 | A | 504 | 3.66 | H.Bond | A | No SSE | 77 | THR | OG1 | O4 | A | 504 | 2.53 | H.Bond | A | No SSE | 77 | THR | CG2 | O4 | A | 504 | 3.82 | van der Waals | A | 94-104 H: 1 | 94 | SER | CB | O3 | A | 504 | 3.45 | van der Waals | A | 94-104 H: 1 | 94 | SER | CB | O4 | A | 504 | 3.8 | van der Waals | A | 94-104 H: 1 | 94 | SER | OG | C5 | A | 504 | 3.41 | van der Waals | A | 94-104 H: 1 | 94 | SER | OG | O3 | A | 504 | 2.49 | H.Bond | A | 94-104 H: 1 | 94 | SER | OG | O4 | A | 504 | 3.61 | H.Bond | A | 94-104 H: 1 | 96 | ASN | CB | O3 | A | 504 | 3.6 | van der Waals | A | 94-104 H: 1 | 96 | ASN | CG | O3 | A | 504 | 3.7 | van der Waals | A | 94-104 H: 1 | 96 | ASN | ND2 | C3 | A | 504 | 3.97 | H.Bond | A | 94-104 H: 1 | 96 | ASN | ND2 | C5 | A | 504 | 3.79 | H.Bond | A | 94-104 H: 1 | 96 | ASN | ND2 | O3 | A | 504 | 2.9 | H.Bond | A | 94-104 H: 1 | 100 | ARG | CZ | O1 | A | 504 | 3.62 | van der Waals | A | 94-104 H: 1 | 100 | ARG | NH1 | O1 | A | 504 | 3.45 | H.Bond | A | 94-104 H: 1 | 100 | ARG | NH2 | O1 | A | 504 | 2.92 | H.Bond | A | 106-111 S: -1 | 109 | ARG | CZ | O1 | A | 504 | 3.8 | van der Waals | A | 106-111 S: -1 | 109 | ARG | CZ | O2 | A | 504 | 3.57 | van der Waals | A | 106-111 S: -1 | 109 | ARG | NH1 | C1 | A | 504 | 3.73 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH1 | O1 | A | 504 | 3.8 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH1 | O2 | A | 504 | 2.86 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH2 | C1 | A | 504 | 3.61 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH2 | O1 | A | 504 | 2.93 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH2 | O2 | A | 504 | 3.45 | H.Bond | A | 128-133 S: -1 | 132 | ARG | NH1 | C1 | A | 504 | 3.65 | H.Bond | A | 128-133 S: -1 | 132 | ARG | NH1 | O1 | A | 504 | 3.48 | H.Bond | A | 128-133 S: -1 | 132 | ARG | NH1 | O2 | A | 504 | 3.5 | H.Bond | A | 270-285 H: 1 | 275 | ASP | CG | O2 | A | 504 | 3.8 | van der Waals | A | 270-285 H: 1 | 275 | ASP | OD1 | C1 | A | 504 | 3.61 | van der Waals | A | 270-285 H: 1 | 275 | ASP | OD1 | O2 | A | 504 | 2.97 | H.Bond | A | 270-285 H: 1 | 275 | ASP | OD1 | C2 | A | 504 | 3.76 | van der Waals | A | 270-285 H: 1 | 275 | ASP | OD1 | O5 | A | 504 | 3.41 | H.Bond | A | 270-285 H: 1 | 275 | ASP | OD2 | O5 | A | 504 | 3.91 | H.Bond | A | No SSE | 308 | ALA | O | C1 | A | 504 | 3.7 | van der Waals | A | No SSE | 308 | ALA | O | O2 | A | 504 | 3.47 | H.Bond | A | Water | 602 | HOH | O | O2 | A | 504 | 2.95 | H.Bond | A | Water | 721 | HOH | O | O3 | A | 504 | 2.69 | H.Bond | |
| 2 / B |
> Structure: SSHLLH
+2w
> Sequence: TSNRRRDA
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AKG /(503) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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B | No SSE | 77 | THR | CB | O4 | B | 503 | 3.28 | van der Waals | B | No SSE | 77 | THR | OG1 | C5 | B | 503 | 3.43 | van der Waals | B | No SSE | 77 | THR | OG1 | O3 | B | 503 | 3.66 | H.Bond | B | No SSE | 77 | THR | OG1 | O4 | B | 503 | 2.61 | H.Bond | B | No SSE | 77 | THR | CG2 | O4 | B | 503 | 3.81 | van der Waals | B | 94-104 H: 1 | 94 | SER | CB | C5 | B | 503 | 3.95 | van der Waals | B | 94-104 H: 1 | 94 | SER | CB | O3 | B | 503 | 3.46 | van der Waals | B | 94-104 H: 1 | 94 | SER | CB | O4 | B | 503 | 3.65 | van der Waals | B | 94-104 H: 1 | 94 | SER | OG | C5 | B | 503 | 3.38 | van der Waals | B | 94-104 H: 1 | 94 | SER | OG | O3 | B | 503 | 2.51 | H.Bond | B | 94-104 H: 1 | 94 | SER | OG | O4 | B | 503 | 3.53 | H.Bond | B | 94-104 H: 1 | 96 | ASN | CB | O3 | B | 503 | 3.64 | van der Waals | B | 94-104 H: 1 | 96 | ASN | CG | O3 | B | 503 | 3.86 | van der Waals | B | 94-104 H: 1 | 96 | ASN | ND2 | O3 | B | 503 | 3.12 | H.Bond | B | 94-104 H: 1 | 100 | ARG | CZ | O1 | B | 503 | 3.81 | van der Waals | B | 94-104 H: 1 | 100 | ARG | NH1 | O1 | B | 503 | 3.65 | H.Bond | B | 94-104 H: 1 | 100 | ARG | NH2 | O1 | B | 503 | 3.07 | H.Bond | B | 106-111 S: -1 | 109 | ARG | CZ | O1 | B | 503 | 3.79 | van der Waals | B | 106-111 S: -1 | 109 | ARG | CZ | O2 | B | 503 | 3.65 | van der Waals | B | 106-111 S: -1 | 109 | ARG | NH1 | C1 | B | 503 | 3.81 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH1 | O1 | B | 503 | 3.83 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH1 | O2 | B | 503 | 2.97 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH2 | C1 | B | 503 | 3.61 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH2 | O1 | B | 503 | 2.89 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH2 | O2 | B | 503 | 3.5 | H.Bond | B | 128-133 S: -1 | 132 | ARG | NH1 | C1 | B | 503 | 3.82 | H.Bond | B | 128-133 S: -1 | 132 | ARG | NH1 | O1 | B | 503 | 3.61 | H.Bond | B | 128-133 S: -1 | 132 | ARG | NH1 | O2 | B | 503 | 3.79 | H.Bond | B | 270-285 H: 1 | 275 | ASP | CG | O2 | B | 503 | 3.69 | van der Waals | B | 270-285 H: 1 | 275 | ASP | CG | O5 | B | 503 | 3.92 | van der Waals | B | 270-285 H: 1 | 275 | ASP | OD1 | C1 | B | 503 | 3.38 | van der Waals | B | 270-285 H: 1 | 275 | ASP | OD1 | O2 | B | 503 | 2.74 | H.Bond | B | 270-285 H: 1 | 275 | ASP | OD1 | C2 | B | 503 | 3.62 | van der Waals | B | 270-285 H: 1 | 275 | ASP | OD1 | O5 | B | 503 | 3.31 | H.Bond | B | 270-285 H: 1 | 275 | ASP | OD2 | C2 | B | 503 | 3.99 | van der Waals | B | 270-285 H: 1 | 275 | ASP | OD2 | O5 | B | 503 | 3.71 | H.Bond | B | No SSE | 308 | ALA | O | C1 | B | 503 | 3.72 | van der Waals | B | No SSE | 308 | ALA | O | O2 | B | 503 | 3.44 | H.Bond | B | Water | 616 | HOH | O | O4 | B | 503 | 2.57 | H.Bond | B | Water | 681 | HOH | O | O3 | B | 503 | 2.91 | H.Bond | |
| 3 / C |
> Structure: SSHLLH
+3w
> Sequence: TSNRRRDA
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AKG /(503) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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C | No SSE | 77 | THR | CB | O3 | C | 503 | 3.26 | van der Waals | C | No SSE | 77 | THR | OG1 | C5 | C | 503 | 3.43 | van der Waals | C | No SSE | 77 | THR | OG1 | O3 | C | 503 | 2.67 | H.Bond | C | No SSE | 77 | THR | OG1 | O4 | C | 503 | 3.55 | H.Bond | C | No SSE | 77 | THR | CG2 | O3 | C | 503 | 3.81 | van der Waals | C | 94-104 H: 1 | 94 | SER | CB | C5 | C | 503 | 3.99 | van der Waals | C | 94-104 H: 1 | 94 | SER | CB | O3 | C | 503 | 3.79 | van der Waals | C | 94-104 H: 1 | 94 | SER | CB | O4 | C | 503 | 3.36 | van der Waals | C | 94-104 H: 1 | 94 | SER | OG | C5 | C | 503 | 3.41 | van der Waals | C | 94-104 H: 1 | 94 | SER | OG | O3 | C | 503 | 3.66 | H.Bond | C | 94-104 H: 1 | 94 | SER | OG | O4 | C | 503 | 2.43 | H.Bond | C | 94-104 H: 1 | 96 | ASN | CB | O4 | C | 503 | 3.54 | van der Waals | C | 94-104 H: 1 | 96 | ASN | CG | O4 | C | 503 | 3.6 | van der Waals | C | 94-104 H: 1 | 96 | ASN | OD1 | C3 | C | 503 | 3.71 | van der Waals | C | 94-104 H: 1 | 96 | ASN | OD1 | C5 | C | 503 | 3.74 | van der Waals | C | 94-104 H: 1 | 96 | ASN | OD1 | O4 | C | 503 | 2.87 | H.Bond | C | 94-104 H: 1 | 100 | ARG | CZ | O1 | C | 503 | 3.55 | van der Waals | C | 94-104 H: 1 | 100 | ARG | NH1 | O1 | C | 503 | 3.36 | H.Bond | C | 94-104 H: 1 | 100 | ARG | NH2 | O1 | C | 503 | 2.88 | H.Bond | C | 106-111 S: -1 | 109 | ARG | CZ | O1 | C | 503 | 3.74 | van der Waals | C | 106-111 S: -1 | 109 | ARG | CZ | O2 | C | 503 | 3.6 | van der Waals | C | 106-111 S: -1 | 109 | ARG | NH1 | C1 | C | 503 | 3.88 | H.Bond | C | 106-111 S: -1 | 109 | ARG | NH1 | O1 | C | 503 | 3.86 | H.Bond | C | 106-111 S: -1 | 109 | ARG | NH1 | O2 | C | 503 | 3.06 | H.Bond | C | 106-111 S: -1 | 109 | ARG | NH2 | C1 | C | 503 | 3.46 | H.Bond | C | 106-111 S: -1 | 109 | ARG | NH2 | O1 | C | 503 | 2.76 | H.Bond | C | 106-111 S: -1 | 109 | ARG | NH2 | O2 | C | 503 | 3.33 | H.Bond | C | 128-133 S: -1 | 132 | ARG | NH1 | C1 | C | 503 | 3.61 | H.Bond | C | 128-133 S: -1 | 132 | ARG | NH1 | O1 | C | 503 | 3.19 | H.Bond | C | 128-133 S: -1 | 132 | ARG | NH1 | O2 | C | 503 | 3.74 | H.Bond | C | 270-285 H: 1 | 275 | ASP | CG | O2 | C | 503 | 3.91 | van der Waals | C | 270-285 H: 1 | 275 | ASP | CG | O5 | C | 503 | 3.92 | van der Waals | C | 270-285 H: 1 | 275 | ASP | OD1 | C1 | C | 503 | 3.48 | van der Waals | C | 270-285 H: 1 | 275 | ASP | OD1 | O2 | C | 503 | 2.97 | H.Bond | C | 270-285 H: 1 | 275 | ASP | OD1 | C2 | C | 503 | 3.67 | van der Waals | C | 270-285 H: 1 | 275 | ASP | OD1 | O5 | C | 503 | 3.26 | H.Bond | C | 270-285 H: 1 | 275 | ASP | OD2 | O5 | C | 503 | 3.77 | H.Bond | C | No SSE | 308 | ALA | O | C1 | C | 503 | 3.85 | van der Waals | C | No SSE | 308 | ALA | O | O2 | C | 503 | 3.5 | H.Bond | C | Water | 602 | HOH | O | O2 | C | 503 | 2.65 | H.Bond | C | Water | 610 | HOH | O | O3 | C | 503 | 2.6 | H.Bond | C | Water | 675 | HOH | O | O4 | C | 503 | 2.74 | H.Bond | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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3 | 4KZO | alpha-Ketoglutarate dehydrogenase | X-RAY | 2.20 | 0.178
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| Motif No./Chain | Mode | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: SHHLLH
+2w
> Sequence: TSNRRYDA
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AKG /(503) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | No SSE | 77 | THR | CB | O4 | A | 503 | 3.31 | van der Waals | A | No SSE | 77 | THR | OG1 | C5 | A | 503 | 3.45 | van der Waals | A | No SSE | 77 | THR | OG1 | O3 | A | 503 | 3.59 | H.Bond | A | No SSE | 77 | THR | OG1 | O4 | A | 503 | 2.65 | H.Bond | A | No SSE | 77 | THR | CG2 | O4 | A | 503 | 3.84 | van der Waals | A | 94-104 H: 1 | 94 | SER | CB | O3 | A | 503 | 3.57 | van der Waals | A | 94-104 H: 1 | 94 | SER | CB | O4 | A | 503 | 3.94 | van der Waals | A | 94-104 H: 1 | 94 | SER | OG | C5 | A | 503 | 3.55 | van der Waals | A | 94-104 H: 1 | 94 | SER | OG | O3 | A | 503 | 2.62 | H.Bond | A | 94-104 H: 1 | 94 | SER | OG | O4 | A | 503 | 3.74 | H.Bond | A | 94-104 H: 1 | 96 | ASN | CB | O3 | A | 503 | 3.58 | van der Waals | A | 94-104 H: 1 | 96 | ASN | CG | O3 | A | 503 | 3.79 | van der Waals | A | 94-104 H: 1 | 96 | ASN | ND2 | C5 | A | 503 | 3.98 | H.Bond | A | 94-104 H: 1 | 96 | ASN | ND2 | O3 | A | 503 | 3.05 | H.Bond | A | 94-104 H: 1 | 100 | ARG | CZ | O1 | A | 503 | 3.39 | van der Waals | A | 94-104 H: 1 | 100 | ARG | NH1 | O1 | A | 503 | 3.18 | H.Bond | A | 94-104 H: 1 | 100 | ARG | NH2 | O1 | A | 503 | 2.76 | H.Bond | A | 106-111 S: -1 | 109 | ARG | CZ | O1 | A | 503 | 3.74 | van der Waals | A | 106-111 S: -1 | 109 | ARG | CZ | O2 | A | 503 | 3.44 | van der Waals | A | 106-111 S: -1 | 109 | ARG | NH1 | C1 | A | 503 | 3.58 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH1 | O1 | A | 503 | 3.7 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH1 | O2 | A | 503 | 2.67 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH2 | C1 | A | 503 | 3.54 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH2 | O1 | A | 503 | 2.9 | H.Bond | A | 106-111 S: -1 | 109 | ARG | NH2 | O2 | A | 503 | 3.39 | H.Bond | A | 136-141 H: 5 | 139 | TYR | CE2 | O3 | A | 503 | 3.86 | van der Waals | A | 136-141 H: 5 | 139 | TYR | OH | C2 | A | 503 | 3.71 | van der Waals | A | 136-141 H: 5 | 139 | TYR | OH | C3 | A | 503 | 3.25 | van der Waals | A | 136-141 H: 5 | 139 | TYR | OH | C4 | A | 503 | 3.49 | van der Waals | A | 136-141 H: 5 | 139 | TYR | OH | C5 | A | 503 | 3.75 | van der Waals | A | 136-141 H: 5 | 139 | TYR | OH | O3 | A | 503 | 3.86 | H.Bond | A | 270-285 H: 1 | 275 | ASP | O | O2 | A | 503 | 3.86 | H.Bond | A | 270-285 H: 1 | 275 | ASP | CG | C1 | A | 503 | 3.83 | van der Waals | A | 270-285 H: 1 | 275 | ASP | CG | O2 | A | 503 | 3.58 | van der Waals | A | 270-285 H: 1 | 275 | ASP | CG | C2 | A | 503 | 3.9 | van der Waals | A | 270-285 H: 1 | 275 | ASP | CG | O5 | A | 503 | 3.78 | van der Waals | A | 270-285 H: 1 | 275 | ASP | OD1 | C1 | A | 503 | 3.12 | van der Waals | A | 270-285 H: 1 | 275 | ASP | OD1 | O2 | A | 503 | 2.64 | H.Bond | A | 270-285 H: 1 | 275 | ASP | OD1 | C2 | A | 503 | 3.25 | van der Waals | A | 270-285 H: 1 | 275 | ASP | OD1 | O5 | A | 503 | 2.98 | H.Bond | A | 270-285 H: 1 | 275 | ASP | OD2 | C2 | A | 503 | 3.97 | van der Waals | A | 270-285 H: 1 | 275 | ASP | OD2 | O5 | A | 503 | 3.84 | H.Bond | A | No SSE | 308 | ALA | O | C1 | A | 503 | 3.82 | van der Waals | A | No SSE | 308 | ALA | O | O2 | A | 503 | 3.72 | H.Bond | A | Water | 602 | HOH | O | O2 | A | 503 | 2.88 | H.Bond | A | Water | 615 | HOH | O | O4 | A | 503 | 2.57 | H.Bond | |
| 2 / B |
> Structure: SHHLLH
+2w
> Sequence: TSNRRYDA
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AKG /(503) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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B | No SSE | 77 | THR | CB | O4 | B | 503 | 3.5 | van der Waals | B | No SSE | 77 | THR | OG1 | C5 | B | 503 | 3.68 | van der Waals | B | No SSE | 77 | THR | OG1 | O3 | B | 503 | 3.9 | H.Bond | B | No SSE | 77 | THR | OG1 | O4 | B | 503 | 2.76 | H.Bond | B | 94-104 H: 1 | 94 | SER | CB | O3 | B | 503 | 3.67 | van der Waals | B | 94-104 H: 1 | 94 | SER | CB | O4 | B | 503 | 3.91 | van der Waals | B | 94-104 H: 1 | 94 | SER | OG | C5 | B | 503 | 3.48 | van der Waals | B | 94-104 H: 1 | 94 | SER | OG | O3 | B | 503 | 2.64 | H.Bond | B | 94-104 H: 1 | 94 | SER | OG | O4 | B | 503 | 3.58 | H.Bond | B | 94-104 H: 1 | 96 | ASN | CB | O3 | B | 503 | 3.52 | van der Waals | B | 94-104 H: 1 | 96 | ASN | CG | O3 | B | 503 | 3.81 | van der Waals | B | 94-104 H: 1 | 96 | ASN | ND2 | C5 | B | 503 | 3.99 | H.Bond | B | 94-104 H: 1 | 96 | ASN | ND2 | O3 | B | 503 | 3.12 | H.Bond | B | 94-104 H: 1 | 100 | ARG | CZ | O1 | B | 503 | 3.41 | van der Waals | B | 94-104 H: 1 | 100 | ARG | NH1 | O1 | B | 503 | 3.23 | H.Bond | B | 94-104 H: 1 | 100 | ARG | NH2 | O1 | B | 503 | 2.76 | H.Bond | B | 106-111 S: -1 | 109 | ARG | CZ | C1 | B | 503 | 3.92 | van der Waals | B | 106-111 S: -1 | 109 | ARG | CZ | O1 | B | 503 | 3.64 | van der Waals | B | 106-111 S: -1 | 109 | ARG | CZ | O2 | B | 503 | 3.33 | van der Waals | B | 106-111 S: -1 | 109 | ARG | NH1 | C1 | B | 503 | 3.53 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH1 | O1 | B | 503 | 3.68 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH1 | O2 | B | 503 | 2.59 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH2 | C1 | B | 503 | 3.41 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH2 | O1 | B | 503 | 2.75 | H.Bond | B | 106-111 S: -1 | 109 | ARG | NH2 | O2 | B | 503 | 3.26 | H.Bond | B | 136-141 H: 5 | 139 | TYR | CE2 | O3 | B | 503 | 3.95 | van der Waals | B | 136-141 H: 5 | 139 | TYR | OH | C2 | B | 503 | 3.93 | van der Waals | B | 136-141 H: 5 | 139 | TYR | OH | C3 | B | 503 | 3.24 | van der Waals | B | 136-141 H: 5 | 139 | TYR | OH | C4 | B | 503 | 3.46 | van der Waals | B | 136-141 H: 5 | 139 | TYR | OH | C5 | B | 503 | 3.65 | van der Waals | B | 136-141 H: 5 | 139 | TYR | OH | O3 | B | 503 | 3.59 | H.Bond | B | 270-285 H: 1 | 275 | ASP | O | O2 | B | 503 | 3.95 | H.Bond | B | 270-285 H: 1 | 275 | ASP | CG | C1 | B | 503 | 3.71 | van der Waals | B | 270-285 H: 1 | 275 | ASP | CG | O2 | B | 503 | 3.47 | van der Waals | B | 270-285 H: 1 | 275 | ASP | CG | C2 | B | 503 | 3.72 | van der Waals | B | 270-285 H: 1 | 275 | ASP | CG | O5 | B | 503 | 3.68 | van der Waals | B | 270-285 H: 1 | 275 | ASP | OD1 | C1 | B | 503 | 3.13 | van der Waals | B | 270-285 H: 1 | 275 | ASP | OD1 | O2 | B | 503 | 2.67 | H.Bond | B | 270-285 H: 1 | 275 | ASP | OD1 | C2 | B | 503 | 3.16 | van der Waals | B | 270-285 H: 1 | 275 | ASP | OD1 | O5 | B | 503 | 2.89 | H.Bond | B | 270-285 H: 1 | 275 | ASP | OD2 | C1 | B | 503 | 3.98 | van der Waals | B | 270-285 H: 1 | 275 | ASP | OD2 | C2 | B | 503 | 3.64 | van der Waals | B | 270-285 H: 1 | 275 | ASP | OD2 | O5 | B | 503 | 3.71 | H.Bond | B | No SSE | 308 | ALA | O | C1 | B | 503 | 3.83 | van der Waals | B | No SSE | 308 | ALA | O | O2 | B | 503 | 3.74 | H.Bond | B | Water | 602 | HOH | O | O5 | B | 503 | 3 | H.Bond | B | Water | 617 | HOH | O | O4 | B | 503 | 2.56 | H.Bond | |
| 3 / C |
> Structure: SHHLLH
+1w
> Sequence: TSNRRYDA
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AKG /(503) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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C | No SSE | 77 | THR | CB | O3 | C | 503 | 3.37 | van der Waals | C | No SSE | 77 | THR | OG1 | C5 | C | 503 | 3.49 | van der Waals | C | No SSE | 77 | THR | OG1 | O3 | C | 503 | 2.66 | H.Bond | C | No SSE | 77 | THR | OG1 | O4 | C | 503 | 3.65 | H.Bond | C | No SSE | 77 | THR | CG2 | O3 | C | 503 | 3.96 | van der Waals | C | 94-104 H: 1 | 94 | SER | CB | O3 | C | 503 | 3.91 | van der Waals | C | 94-104 H: 1 | 94 | SER | CB | O4 | C | 503 | 3.49 | van der Waals | C | 94-104 H: 1 | 94 | SER | OG | C5 | C | 503 | 3.35 | van der Waals | C | 94-104 H: 1 | 94 | SER | OG | O3 | C | 503 | 3.55 | H.Bond | C | 94-104 H: 1 | 94 | SER | OG | O4 | C | 503 | 2.42 | H.Bond | C | 94-104 H: 1 | 96 | ASN | CB | O4 | C | 503 | 3.59 | van der Waals | C | 94-104 H: 1 | 96 | ASN | CG | O4 | C | 503 | 3.65 | van der Waals | C | 94-104 H: 1 | 96 | ASN | ND2 | C3 | C | 503 | 3.96 | H.Bond | C | 94-104 H: 1 | 96 | ASN | ND2 | C5 | C | 503 | 3.67 | H.Bond | C | 94-104 H: 1 | 96 | ASN | ND2 | O4 | C | 503 | 2.8 | H.Bond | C | 94-104 H: 1 | 100 | ARG | CZ | O1 | C | 503 | 3.31 | van der Waals | C | 94-104 H: 1 | 100 | ARG | NH1 | O1 | C | 503 | 3.01 | H.Bond | C | 94-104 H: 1 | 100 | ARG | NH2 | C1 | C | 503 | 3.99 | H.Bond | C | 94-104 H: 1 | 100 | ARG | NH2 | O1 | C | 503 | 2.8 | H.Bond | C | 106-111 S: -1 | 109 | ARG | CZ | C1 | C | 503 | 3.99 | van der Waals | C | 106-111 S: -1 | 109 | ARG | CZ | O1 | C | 503 | 3.64 | van der Waals | C | 106-111 S: -1 | 109 | ARG | CZ | O2 | C | 503 | 3.5 | van der Waals | C | 106-111 S: -1 | 109 | ARG | NH1 | C1 | C | 503 | 3.56 | H.Bond | C | 106-111 S: -1 | 109 | ARG | NH1 | O1 | C | 503 | 3.58 | H.Bond | C | 106-111 S: -1 | 109 | ARG | NH1 | O2 | C | 503 | 2.72 | H.Bond | C | 106-111 S: -1 | 109 | ARG | NH2 | C1 | C | 503 | 3.5 | H.Bond | C | 106-111 S: -1 | 109 | ARG | NH2 | O1 | C | 503 | 2.83 | H.Bond | C | 106-111 S: -1 | 109 | ARG | NH2 | O2 | C | 503 | 3.45 | H.Bond | C | 136-141 H: 5 | 139 | TYR | CE2 | O4 | C | 503 | 3.94 | van der Waals | C | 136-141 H: 5 | 139 | TYR | OH | C2 | C | 503 | 3.77 | van der Waals | C | 136-141 H: 5 | 139 | TYR | OH | C3 | C | 503 | 3.23 | van der Waals | C | 136-141 H: 5 | 139 | TYR | OH | C4 | C | 503 | 3.66 | van der Waals | C | 136-141 H: 5 | 139 | TYR | OH | C5 | C | 503 | 3.88 | van der Waals | C | 136-141 H: 5 | 139 | TYR | OH | O4 | C | 503 | 3.89 | H.Bond | C | 270-285 H: 1 | 275 | ASP | O | O2 | C | 503 | 3.73 | H.Bond | C | 270-285 H: 1 | 275 | ASP | CG | C1 | C | 503 | 3.65 | van der Waals | C | 270-285 H: 1 | 275 | ASP | CG | O2 | C | 503 | 3.51 | van der Waals | C | 270-285 H: 1 | 275 | ASP | CG | C2 | C | 503 | 3.88 | van der Waals | C | 270-285 H: 1 | 275 | ASP | CG | O5 | C | 503 | 3.92 | van der Waals | C | 270-285 H: 1 | 275 | ASP | OD1 | C1 | C | 503 | 3.16 | van der Waals | C | 270-285 H: 1 | 275 | ASP | OD1 | O2 | C | 503 | 2.74 | H.Bond | C | 270-285 H: 1 | 275 | ASP | OD1 | C2 | C | 503 | 3.37 | van der Waals | C | 270-285 H: 1 | 275 | ASP | OD1 | O5 | C | 503 | 3.17 | H.Bond | C | 270-285 H: 1 | 275 | ASP | OD2 | C1 | C | 503 | 3.93 | van der Waals | C | 270-285 H: 1 | 275 | ASP | OD2 | C2 | C | 503 | 3.81 | van der Waals | C | 270-285 H: 1 | 275 | ASP | OD2 | O5 | C | 503 | 3.92 | H.Bond | C | No SSE | 308 | ALA | O | O2 | C | 503 | 3.87 | H.Bond | C | Water | 610 | HOH | O | O3 | C | 503 | 2.69 | H.Bond | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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1 | 4AJR | alpha-Ketoglutarate dehydrogenase | X-RAY | 2.69 | 0.160
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| Motif No./Chain | Mode | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: LLHSSHHL
> Sequence: LTSNRRRYDT
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AKG /(1418) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | No SSE | 103 | LEU | O | O4 | A | 1418 | 3.96 | H.Bond | A | No SSE | 105 | THR | CB | C5 | A | 1418 | 3.99 | van der Waals | A | No SSE | 105 | THR | CB | O4 | A | 1418 | 3.01 | van der Waals | A | No SSE | 105 | THR | OG1 | C5 | A | 1418 | 3.32 | van der Waals | A | No SSE | 105 | THR | OG1 | O3 | A | 1418 | 3.44 | H.Bond | A | No SSE | 105 | THR | OG1 | O4 | A | 1418 | 2.49 | H.Bond | A | 113-123 H: 1 | 113 | SER | CB | O3 | A | 1418 | 3.25 | van der Waals | A | 113-123 H: 1 | 113 | SER | OG | C5 | A | 1418 | 3.52 | van der Waals | A | 113-123 H: 1 | 113 | SER | OG | O3 | A | 1418 | 2.43 | H.Bond | A | 113-123 H: 1 | 113 | SER | OG | O4 | A | 1418 | 3.94 | H.Bond | A | 113-123 H: 1 | 115 | ASN | CB | O3 | A | 1418 | 3.57 | van der Waals | A | 113-123 H: 1 | 115 | ASN | CG | O3 | A | 1418 | 3.67 | van der Waals | A | 113-123 H: 1 | 115 | ASN | ND2 | C5 | A | 1418 | 3.26 | H.Bond | A | 113-123 H: 1 | 115 | ASN | ND2 | O3 | A | 1418 | 2.95 | H.Bond | A | 113-123 H: 1 | 115 | ASN | ND2 | O4 | A | 1418 | 3.35 | H.Bond | A | 113-123 H: 1 | 119 | ARG | CZ | O1 | A | 1418 | 3.44 | van der Waals | A | 113-123 H: 1 | 119 | ARG | NH1 | C1 | A | 1418 | 3.9 | H.Bond | A | 113-123 H: 1 | 119 | ARG | NH1 | O1 | A | 1418 | 2.92 | H.Bond | A | 113-123 H: 1 | 119 | ARG | NH2 | C1 | A | 1418 | 3.69 | H.Bond | A | 113-123 H: 1 | 119 | ARG | NH2 | O1 | A | 1418 | 3.15 | H.Bond | A | 126-132 S: -1 | 129 | ARG | CZ | O2 | A | 1418 | 3.61 | van der Waals | A | 126-132 S: -1 | 129 | ARG | NH1 | O2 | A | 1418 | 3.72 | H.Bond | A | 126-132 S: -1 | 129 | ARG | NH2 | C1 | A | 1418 | 3.57 | H.Bond | A | 126-132 S: -1 | 129 | ARG | NH2 | O1 | A | 1418 | 3.73 | H.Bond | A | 126-132 S: -1 | 129 | ARG | NH2 | O2 | A | 1418 | 2.66 | H.Bond | A | 148-154 S: -1 | 153 | ARG | CZ | O1 | A | 1418 | 3.25 | van der Waals | A | 148-154 S: -1 | 153 | ARG | NH1 | C1 | A | 1418 | 3.62 | H.Bond | A | 148-154 S: -1 | 153 | ARG | NH1 | O1 | A | 1418 | 2.77 | H.Bond | A | 148-154 S: -1 | 153 | ARG | NH1 | O2 | A | 1418 | 3.81 | H.Bond | A | 148-154 S: -1 | 153 | ARG | NH2 | C1 | A | 1418 | 3.91 | H.Bond | A | 148-154 S: -1 | 153 | ARG | NH2 | O1 | A | 1418 | 2.88 | H.Bond | A | 158-162 H: 5 | 160 | TYR | OH | C1 | A | 1418 | 3.57 | van der Waals | A | 158-162 H: 5 | 160 | TYR | OH | O1 | A | 1418 | 3.36 | H.Bond | A | 158-162 H: 5 | 160 | TYR | OH | C2 | A | 1418 | 3.04 | van der Waals | A | 158-162 H: 5 | 160 | TYR | OH | O5 | A | 1418 | 3.09 | H.Bond | A | 158-162 H: 5 | 160 | TYR | OH | C3 | A | 1418 | 3.39 | van der Waals | A | 302-317 H: 1 | 307 | ASP | CG | O5 | A | 1418 | 3.89 | van der Waals | A | 302-317 H: 1 | 307 | ASP | OD1 | C1 | A | 1418 | 3.36 | van der Waals | A | 302-317 H: 1 | 307 | ASP | OD1 | O1 | A | 1418 | 3.68 | H.Bond | A | 302-317 H: 1 | 307 | ASP | OD1 | O2 | A | 1418 | 3.44 | H.Bond | A | 302-317 H: 1 | 307 | ASP | OD1 | C2 | A | 1418 | 3.7 | van der Waals | A | 302-317 H: 1 | 307 | ASP | OD1 | O5 | A | 1418 | 3.28 | H.Bond | A | 302-317 H: 1 | 307 | ASP | OD2 | O5 | A | 1418 | 3.8 | H.Bond | A | No SSE | 338 | THR | O | O2 | A | 1418 | 3.65 | H.Bond | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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1 | 4AJC | alpha-Ketoglutarate dehydrogenase | X-RAY | 2.30 | 0.175
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| Motif No./Chain | Mode | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: HSSHH
+2w
> Sequence: SNRRRYD
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AKG /(502) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | 113-122 H: 1 | 113 | SER | CB | O4 | A | 502 | 3.5 | van der Waals | A | 113-122 H: 1 | 113 | SER | OG | C5 | A | 502 | 3.24 | van der Waals | A | 113-122 H: 1 | 113 | SER | OG | O3 | A | 502 | 3.42 | H.Bond | A | 113-122 H: 1 | 113 | SER | OG | O4 | A | 502 | 2.71 | H.Bond | A | 113-122 H: 1 | 115 | ASN | CB | O3 | A | 502 | 3.42 | van der Waals | A | 113-122 H: 1 | 115 | ASN | CG | O3 | A | 502 | 3.92 | van der Waals | A | 113-122 H: 1 | 115 | ASN | OD1 | O4 | A | 502 | 3.91 | H.Bond | A | 113-122 H: 1 | 119 | ARG | CZ | C1 | A | 502 | 3.99 | van der Waals | A | 113-122 H: 1 | 119 | ARG | CZ | O1 | A | 502 | 3.52 | van der Waals | A | 113-122 H: 1 | 119 | ARG | CZ | O2 | A | 502 | 3.96 | van der Waals | A | 113-122 H: 1 | 119 | ARG | NH1 | C1 | A | 502 | 3.37 | H.Bond | A | 113-122 H: 1 | 119 | ARG | NH1 | O1 | A | 502 | 2.58 | H.Bond | A | 113-122 H: 1 | 119 | ARG | NH1 | O2 | A | 502 | 3.74 | H.Bond | A | 113-122 H: 1 | 119 | ARG | NH1 | O3 | A | 502 | 3.87 | H.Bond | A | 113-122 H: 1 | 119 | ARG | NH2 | C1 | A | 502 | 3.66 | H.Bond | A | 113-122 H: 1 | 119 | ARG | NH2 | O1 | A | 502 | 3.62 | H.Bond | A | 113-122 H: 1 | 119 | ARG | NH2 | O2 | A | 502 | 3.27 | H.Bond | A | 126-132 S: -1 | 129 | ARG | NH2 | O2 | A | 502 | 3.29 | H.Bond | A | 148-154 S: -1 | 153 | ARG | CZ | O1 | A | 502 | 3.47 | van der Waals | A | 148-154 S: -1 | 153 | ARG | NH1 | C1 | A | 502 | 3.49 | H.Bond | A | 148-154 S: -1 | 153 | ARG | NH1 | O1 | A | 502 | 3.2 | H.Bond | A | 148-154 S: -1 | 153 | ARG | NH1 | O2 | A | 502 | 3.24 | H.Bond | A | 148-154 S: -1 | 153 | ARG | NH2 | C1 | A | 502 | 3.74 | H.Bond | A | 148-154 S: -1 | 153 | ARG | NH2 | O1 | A | 502 | 2.87 | H.Bond | A | 158-162 H: 5 | 160 | TYR | CE2 | O1 | A | 502 | 3.6 | van der Waals | A | 158-162 H: 5 | 160 | TYR | CE2 | C3 | A | 502 | 3.78 | van der Waals | A | 158-162 H: 5 | 160 | TYR | CZ | O1 | A | 502 | 3.77 | van der Waals | A | 158-162 H: 5 | 160 | TYR | CZ | C3 | A | 502 | 3.6 | van der Waals | A | 158-162 H: 5 | 160 | TYR | OH | C1 | A | 502 | 3.66 | van der Waals | A | 158-162 H: 5 | 160 | TYR | OH | O1 | A | 502 | 3.23 | H.Bond | A | 158-162 H: 5 | 160 | TYR | OH | C2 | A | 502 | 3.38 | van der Waals | A | 158-162 H: 5 | 160 | TYR | OH | C3 | A | 502 | 2.56 | van der Waals | A | 158-162 H: 5 | 160 | TYR | OH | C4 | A | 502 | 3.81 | van der Waals | A | 302-317 H: 1 | 307 | ASP | OD1 | C1 | A | 502 | 3.68 | van der Waals | A | 302-317 H: 1 | 307 | ASP | OD1 | O2 | A | 502 | 3.79 | H.Bond | A | 302-317 H: 1 | 307 | ASP | OD1 | C2 | A | 502 | 3.79 | van der Waals | A | Water | 2168 | HOH | O | O2 | A | 502 | 2.76 | H.Bond | A | Water | 2428 | HOH | O | C2 | A | 502 | 2.88 | H.Bond | A | Water | 2428 | HOH | O | O5 | A | 502 | 2.71 | H.Bond | A | Water | 2428 | HOH | O | O3 | A | 502 | 2.4 | H.Bond | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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4 | 3O9Z | alpha-Ketoglutarate dehydrogenase | X-RAY | 1.45 | 0.194
|
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| Motif No./Chain | Mode | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: LSLHHSL
+2w
> Sequence: KYTRNIHRF
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AKG /(312) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
---|
A | No SSE | 101 | LYS | CD | O5 | A | 312 | 3.62 | van der Waals | A | No SSE | 101 | LYS | CE | O5 | A | 312 | 3.4 | van der Waals | A | No SSE | 101 | LYS | NZ | C1 | A | 312 | 3.73 | H.Bond | A | No SSE | 101 | LYS | NZ | O2 | A | 312 | 2.93 | H.Bond | A | No SSE | 101 | LYS | NZ | C2 | A | 312 | 3.66 | H.Bond | A | No SSE | 101 | LYS | NZ | O5 | A | 312 | 2.8 | H.Bond | A | 150-158 S: 1 | 156 | TYR | CE1 | O4 | A | 312 | 3.2 | van der Waals | A | 150-158 S: 1 | 156 | TYR | CZ | O4 | A | 312 | 3.29 | van der Waals | A | 150-158 S: 1 | 156 | TYR | OH | C5 | A | 312 | 3.65 | van der Waals | A | 150-158 S: 1 | 156 | TYR | OH | O4 | A | 312 | 2.62 | H.Bond | A | 150-158 S: 1 | 158 | THR | CB | C5 | A | 312 | 3.96 | van der Waals | A | 150-158 S: 1 | 158 | THR | CB | O3 | A | 312 | 3.63 | van der Waals | A | 150-158 S: 1 | 158 | THR | CB | O4 | A | 312 | 3.88 | van der Waals | A | 150-158 S: 1 | 158 | THR | OG1 | C5 | A | 312 | 3.61 | van der Waals | A | 150-158 S: 1 | 158 | THR | OG1 | O3 | A | 312 | 2.86 | H.Bond | A | 150-158 S: 1 | 158 | THR | OG1 | O4 | A | 312 | 3.85 | H.Bond | A | 150-158 S: 1 | 158 | THR | CG2 | C5 | A | 312 | 3.76 | van der Waals | A | 150-158 S: 1 | 158 | THR | CG2 | O3 | A | 312 | 3.72 | van der Waals | A | 150-158 S: 1 | 158 | THR | CG2 | O4 | A | 312 | 3.82 | van der Waals | A | No SSE | 160 | ARG | NE | O1 | A | 312 | 3.88 | H.Bond | A | No SSE | 160 | ARG | CZ | O1 | A | 312 | 3.77 | van der Waals | A | No SSE | 160 | ARG | CZ | O3 | A | 312 | 3.88 | van der Waals | A | No SSE | 160 | ARG | NH1 | O3 | A | 312 | 3.91 | H.Bond | A | No SSE | 160 | ARG | NH2 | C1 | A | 312 | 3.74 | H.Bond | A | No SSE | 160 | ARG | NH2 | O1 | A | 312 | 2.78 | H.Bond | A | No SSE | 160 | ARG | NH2 | C3 | A | 312 | 3.54 | H.Bond | A | No SSE | 160 | ARG | NH2 | C4 | A | 312 | 3.42 | H.Bond | A | No SSE | 160 | ARG | NH2 | C5 | A | 312 | 3.52 | H.Bond | A | No SSE | 160 | ARG | NH2 | O3 | A | 312 | 2.96 | H.Bond | A | 177-182 H: 1 | 181 | ASN | O | O2 | A | 312 | 3.91 | H.Bond | A | 177-182 H: 1 | 182 | ILE | CD1 | C1 | A | 312 | 3.82 | van der Waals | A | 177-182 H: 1 | 182 | ILE | CD1 | O1 | A | 312 | 3.68 | van der Waals | A | 183-195 H: 1 | 185 | HIS | CD2 | O5 | A | 312 | 3.38 | van der Waals | A | 183-195 H: 1 | 185 | HIS | CD2 | C4 | A | 312 | 3.88 | van der Waals | A | 183-195 H: 1 | 185 | HIS | CE1 | O5 | A | 312 | 3.99 | van der Waals | A | 183-195 H: 1 | 185 | HIS | NE2 | C2 | A | 312 | 3.73 | H.Bond | A | 183-195 H: 1 | 185 | HIS | NE2 | O5 | A | 312 | 2.8 | H.Bond | A | 183-195 H: 1 | 185 | HIS | NE2 | C3 | A | 312 | 3.94 | H.Bond | A | 243-249 S: -1 | 245 | ARG | CD | O4 | A | 312 | 3.97 | van der Waals | A | 243-249 S: -1 | 245 | ARG | NE | C5 | A | 312 | 3.86 | H.Bond | A | 243-249 S: -1 | 245 | ARG | NE | O4 | A | 312 | 2.9 | H.Bond | A | 243-249 S: -1 | 245 | ARG | CZ | O3 | A | 312 | 3.96 | van der Waals | A | 243-249 S: -1 | 245 | ARG | CZ | O4 | A | 312 | 3.5 | van der Waals | A | 243-249 S: -1 | 245 | ARG | NH2 | C5 | A | 312 | 3.48 | H.Bond | A | 243-249 S: -1 | 245 | ARG | NH2 | O3 | A | 312 | 2.98 | H.Bond | A | 243-249 S: -1 | 245 | ARG | NH2 | O4 | A | 312 | 3.24 | H.Bond | A | No SSE | 260 | PHE | CE2 | C3 | A | 312 | 3.92 | van der Waals | A | No SSE | 260 | PHE | CE2 | C5 | A | 312 | 3.62 | van der Waals | A | No SSE | 260 | PHE | CE2 | O3 | A | 312 | 3.96 | van der Waals | A | No SSE | 260 | PHE | CE2 | O4 | A | 312 | 3.56 | van der Waals | A | No SSE | 260 | PHE | CZ | C5 | A | 312 | 3.8 | van der Waals | A | No SSE | 260 | PHE | CZ | O4 | A | 312 | 3.43 | van der Waals | A | Water | 332 | HOH | O | O2 | A | 312 | 2.69 | H.Bond | A | Water | 341 | HOH | O | O1 | A | 312 | 2.66 | H.Bond | |
| 2 / B |
> Structure: LSLHHSL
+3w
> Sequence: KYTRNIHRF
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AKG /(312) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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B | No SSE | 101 | LYS | CD | O5 | B | 312 | 3.56 | van der Waals | B | No SSE | 101 | LYS | CE | O5 | B | 312 | 3.37 | van der Waals | B | No SSE | 101 | LYS | NZ | C1 | B | 312 | 3.68 | H.Bond | B | No SSE | 101 | LYS | NZ | O2 | B | 312 | 2.88 | H.Bond | B | No SSE | 101 | LYS | NZ | C2 | B | 312 | 3.64 | H.Bond | B | No SSE | 101 | LYS | NZ | O5 | B | 312 | 2.82 | H.Bond | B | 150-158 S: 1 | 156 | TYR | CE1 | O4 | B | 312 | 3.19 | van der Waals | B | 150-158 S: 1 | 156 | TYR | CZ | O4 | B | 312 | 3.29 | van der Waals | B | 150-158 S: 1 | 156 | TYR | OH | C5 | B | 312 | 3.69 | van der Waals | B | 150-158 S: 1 | 156 | TYR | OH | O4 | B | 312 | 2.64 | H.Bond | B | 150-158 S: 1 | 158 | THR | CB | C5 | B | 312 | 3.85 | van der Waals | B | 150-158 S: 1 | 158 | THR | CB | O3 | B | 312 | 3.56 | van der Waals | B | 150-158 S: 1 | 158 | THR | CB | O4 | B | 312 | 3.75 | van der Waals | B | 150-158 S: 1 | 158 | THR | OG1 | C5 | B | 312 | 3.51 | van der Waals | B | 150-158 S: 1 | 158 | THR | OG1 | O3 | B | 312 | 2.77 | H.Bond | B | 150-158 S: 1 | 158 | THR | OG1 | O4 | B | 312 | 3.75 | H.Bond | B | 150-158 S: 1 | 158 | THR | CG2 | C5 | B | 312 | 3.62 | van der Waals | B | 150-158 S: 1 | 158 | THR | CG2 | O3 | B | 312 | 3.64 | van der Waals | B | 150-158 S: 1 | 158 | THR | CG2 | O4 | B | 312 | 3.66 | van der Waals | B | No SSE | 160 | ARG | NE | O1 | B | 312 | 3.92 | H.Bond | B | No SSE | 160 | ARG | CZ | O1 | B | 312 | 3.79 | van der Waals | B | No SSE | 160 | ARG | CZ | O3 | B | 312 | 3.86 | van der Waals | B | No SSE | 160 | ARG | NH1 | O3 | B | 312 | 3.88 | H.Bond | B | No SSE | 160 | ARG | NH2 | C1 | B | 312 | 3.81 | H.Bond | B | No SSE | 160 | ARG | NH2 | O1 | B | 312 | 2.78 | H.Bond | B | No SSE | 160 | ARG | NH2 | C3 | B | 312 | 3.59 | H.Bond | B | No SSE | 160 | ARG | NH2 | C4 | B | 312 | 3.5 | H.Bond | B | No SSE | 160 | ARG | NH2 | C5 | B | 312 | 3.52 | H.Bond | B | No SSE | 160 | ARG | NH2 | O3 | B | 312 | 2.93 | H.Bond | B | 177-182 H: 1 | 181 | ASN | O | O2 | B | 312 | 3.86 | H.Bond | B | 177-182 H: 1 | 182 | ILE | CD1 | C1 | B | 312 | 3.94 | van der Waals | B | 177-182 H: 1 | 182 | ILE | CD1 | O1 | B | 312 | 3.72 | van der Waals | B | 183-195 H: 1 | 185 | HIS | CD2 | O5 | B | 312 | 3.38 | van der Waals | B | 183-195 H: 1 | 185 | HIS | CD2 | C4 | B | 312 | 3.83 | van der Waals | B | 183-195 H: 1 | 185 | HIS | CE1 | O5 | B | 312 | 3.96 | van der Waals | B | 183-195 H: 1 | 185 | HIS | NE2 | C2 | B | 312 | 3.74 | H.Bond | B | 183-195 H: 1 | 185 | HIS | NE2 | O5 | B | 312 | 2.78 | H.Bond | B | 183-195 H: 1 | 185 | HIS | NE2 | C3 | B | 312 | 3.94 | H.Bond | B | 183-195 H: 1 | 185 | HIS | NE2 | C4 | B | 312 | 3.97 | H.Bond | B | 243-249 S: -1 | 245 | ARG | NE | O4 | B | 312 | 3 | H.Bond | B | 243-249 S: -1 | 245 | ARG | CZ | O4 | B | 312 | 3.51 | van der Waals | B | 243-249 S: -1 | 245 | ARG | NH2 | C5 | B | 312 | 3.46 | H.Bond | B | 243-249 S: -1 | 245 | ARG | NH2 | O3 | B | 312 | 3.06 | H.Bond | B | 243-249 S: -1 | 245 | ARG | NH2 | O4 | B | 312 | 3.16 | H.Bond | B | No SSE | 260 | PHE | CE2 | C3 | B | 312 | 3.92 | van der Waals | B | No SSE | 260 | PHE | CE2 | C5 | B | 312 | 3.64 | van der Waals | B | No SSE | 260 | PHE | CE2 | O3 | B | 312 | 3.98 | van der Waals | B | No SSE | 260 | PHE | CE2 | O4 | B | 312 | 3.57 | van der Waals | B | No SSE | 260 | PHE | CZ | C5 | B | 312 | 3.81 | van der Waals | B | No SSE | 260 | PHE | CZ | O4 | B | 312 | 3.43 | van der Waals | B | Water | 346 | HOH | O | O1 | B | 312 | 2.67 | H.Bond | B | Water | 352 | HOH | O | O2 | B | 312 | 2.63 | H.Bond | B | Water | 1086 | HOH | O | O3 | B | 312 | 2.99 | H.Bond | |
| 3 / C |
> Structure: LSLHHSL
+2w
> Sequence: KYTRNIHRF
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AKG /(312) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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C | No SSE | 101 | LYS | CD | O1 | C | 312 | 3.59 | van der Waals | C | No SSE | 101 | LYS | CE | O1 | C | 312 | 3.42 | van der Waals | C | No SSE | 101 | LYS | NZ | C1 | C | 312 | 3.03 | H.Bond | C | No SSE | 101 | LYS | NZ | O1 | C | 312 | 2.77 | H.Bond | C | No SSE | 101 | LYS | NZ | O2 | C | 312 | 2.87 | H.Bond | C | 150-158 S: 1 | 156 | TYR | CE1 | O3 | C | 312 | 3.21 | van der Waals | C | 150-158 S: 1 | 156 | TYR | CZ | O3 | C | 312 | 3.31 | van der Waals | C | 150-158 S: 1 | 156 | TYR | OH | C5 | C | 312 | 3.69 | van der Waals | C | 150-158 S: 1 | 156 | TYR | OH | O3 | C | 312 | 2.64 | H.Bond | C | 150-158 S: 1 | 158 | THR | CB | C5 | C | 312 | 3.98 | van der Waals | C | 150-158 S: 1 | 158 | THR | CB | O3 | C | 312 | 3.9 | van der Waals | C | 150-158 S: 1 | 158 | THR | CB | O4 | C | 312 | 3.62 | van der Waals | C | 150-158 S: 1 | 158 | THR | OG1 | C5 | C | 312 | 3.58 | van der Waals | C | 150-158 S: 1 | 158 | THR | OG1 | O3 | C | 312 | 3.84 | H.Bond | C | 150-158 S: 1 | 158 | THR | OG1 | O4 | C | 312 | 2.8 | H.Bond | C | 150-158 S: 1 | 158 | THR | CG2 | C5 | C | 312 | 3.77 | van der Waals | C | 150-158 S: 1 | 158 | THR | CG2 | O3 | C | 312 | 3.82 | van der Waals | C | 150-158 S: 1 | 158 | THR | CG2 | O4 | C | 312 | 3.71 | van der Waals | C | No SSE | 160 | ARG | CZ | O5 | C | 312 | 3.79 | van der Waals | C | No SSE | 160 | ARG | CZ | O4 | C | 312 | 3.82 | van der Waals | C | No SSE | 160 | ARG | NH1 | O4 | C | 312 | 3.88 | H.Bond | C | No SSE | 160 | ARG | NH2 | C2 | C | 312 | 3.28 | H.Bond | C | No SSE | 160 | ARG | NH2 | O5 | C | 312 | 2.7 | H.Bond | C | No SSE | 160 | ARG | NH2 | C3 | C | 312 | 3.49 | H.Bond | C | No SSE | 160 | ARG | NH2 | C4 | C | 312 | 3.59 | H.Bond | C | No SSE | 160 | ARG | NH2 | C5 | C | 312 | 3.56 | H.Bond | C | No SSE | 160 | ARG | NH2 | O4 | C | 312 | 2.89 | H.Bond | C | 177-182 H: 1 | 181 | ASN | O | C1 | C | 312 | 3.92 | van der Waals | C | 177-182 H: 1 | 181 | ASN | O | O2 | C | 312 | 3.7 | H.Bond | C | 177-182 H: 1 | 182 | ILE | CD1 | C2 | C | 312 | 3.98 | van der Waals | C | 177-182 H: 1 | 182 | ILE | CD1 | O5 | C | 312 | 3.56 | van der Waals | C | 183-195 H: 1 | 185 | HIS | CD2 | O1 | C | 312 | 3.44 | van der Waals | C | 183-195 H: 1 | 185 | HIS | CD2 | C4 | C | 312 | 3.83 | van der Waals | C | 183-195 H: 1 | 185 | HIS | CE1 | O1 | C | 312 | 3.99 | van der Waals | C | 183-195 H: 1 | 185 | HIS | NE2 | O1 | C | 312 | 2.83 | H.Bond | C | 183-195 H: 1 | 185 | HIS | NE2 | C4 | C | 312 | 3.96 | H.Bond | C | 243-249 S: -1 | 245 | ARG | NE | C5 | C | 312 | 3.96 | H.Bond | C | 243-249 S: -1 | 245 | ARG | NE | O3 | C | 312 | 2.97 | H.Bond | C | 243-249 S: -1 | 245 | ARG | CZ | O3 | C | 312 | 3.51 | van der Waals | C | 243-249 S: -1 | 245 | ARG | NH2 | C5 | C | 312 | 3.48 | H.Bond | C | 243-249 S: -1 | 245 | ARG | NH2 | O3 | C | 312 | 3.19 | H.Bond | C | 243-249 S: -1 | 245 | ARG | NH2 | O4 | C | 312 | 3.08 | H.Bond | C | No SSE | 260 | PHE | CE2 | C5 | C | 312 | 3.64 | van der Waals | C | No SSE | 260 | PHE | CE2 | O3 | C | 312 | 3.6 | van der Waals | C | No SSE | 260 | PHE | CE2 | O4 | C | 312 | 3.99 | van der Waals | C | No SSE | 260 | PHE | CZ | C5 | C | 312 | 3.77 | van der Waals | C | No SSE | 260 | PHE | CZ | O3 | C | 312 | 3.41 | van der Waals | C | Water | 316 | HOH | O | O5 | C | 312 | 2.84 | H.Bond | C | Water | 393 | HOH | O | O2 | C | 312 | 2.81 | H.Bond | |
| 4 / D |
> Structure: LSLHHSL
+1w
> Sequence: KYTRNHRF
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AKG /(312) |
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> Graphics rep1:
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> Graphics rep2:
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> Graphics rep3:
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
---|
D | No SSE | 101 | LYS | CD | O5 | D | 312 | 3.84 | van der Waals | D | No SSE | 101 | LYS | CE | O5 | D | 312 | 3.56 | van der Waals | D | No SSE | 101 | LYS | NZ | C1 | D | 312 | 3.76 | H.Bond | D | No SSE | 101 | LYS | NZ | O2 | D | 312 | 2.97 | H.Bond | D | No SSE | 101 | LYS | NZ | C2 | D | 312 | 3.71 | H.Bond | D | No SSE | 101 | LYS | NZ | O5 | D | 312 | 2.95 | H.Bond | D | 150-158 S: 1 | 156 | TYR | CD2 | O4 | D | 312 | 3.87 | van der Waals | D | 150-158 S: 1 | 156 | TYR | CE1 | O4 | D | 312 | 3.82 | van der Waals | D | 150-158 S: 1 | 156 | TYR | CE2 | C5 | D | 312 | 3.45 | van der Waals | D | 150-158 S: 1 | 156 | TYR | CE2 | O4 | D | 312 | 2.57 | van der Waals | D | 150-158 S: 1 | 156 | TYR | CZ | C5 | D | 312 | 3.49 | van der Waals | D | 150-158 S: 1 | 156 | TYR | CZ | O3 | D | 312 | 3.86 | van der Waals | D | 150-158 S: 1 | 156 | TYR | CZ | O4 | D | 312 | 2.54 | van der Waals | D | 150-158 S: 1 | 156 | TYR | OH | C5 | D | 312 | 2.66 | van der Waals | D | 150-158 S: 1 | 156 | TYR | OH | O3 | D | 312 | 2.74 | H.Bond | D | 150-158 S: 1 | 156 | TYR | OH | O4 | D | 312 | 1.95 | H.Bond, Covalent | D | 150-158 S: 1 | 158 | THR | OG1 | O3 | D | 312 | 3.53 | H.Bond | D | 150-158 S: 1 | 158 | THR | CG2 | O3 | D | 312 | 3.86 | van der Waals | D | No SSE | 160 | ARG | CZ | O3 | D | 312 | 3.88 | van der Waals | D | No SSE | 160 | ARG | NH2 | O1 | D | 312 | 3.44 | H.Bond | D | No SSE | 160 | ARG | NH2 | C4 | D | 312 | 3.91 | H.Bond | D | No SSE | 160 | ARG | NH2 | C5 | D | 312 | 3.62 | H.Bond | D | No SSE | 160 | ARG | NH2 | O3 | D | 312 | 2.86 | H.Bond | D | 177-182 H: 1 | 181 | ASN | O | C1 | D | 312 | 3.58 | van der Waals | D | 177-182 H: 1 | 181 | ASN | O | O2 | D | 312 | 3.07 | H.Bond | D | 177-182 H: 1 | 181 | ASN | O | C2 | D | 312 | 3.75 | van der Waals | D | 177-182 H: 1 | 181 | ASN | O | O5 | D | 312 | 3.63 | H.Bond | D | 177-182 H: 1 | 181 | ASN | CG | O2 | D | 312 | 3.77 | van der Waals | D | 177-182 H: 1 | 181 | ASN | OD1 | O2 | D | 312 | 3.67 | H.Bond | D | 177-182 H: 1 | 181 | ASN | ND2 | O2 | D | 312 | 3.51 | H.Bond | D | 183-195 H: 1 | 185 | HIS | CD2 | C2 | D | 312 | 3.99 | van der Waals | D | 183-195 H: 1 | 185 | HIS | CD2 | O5 | D | 312 | 3.28 | van der Waals | D | 183-195 H: 1 | 185 | HIS | CD2 | C4 | D | 312 | 3.69 | van der Waals | D | 183-195 H: 1 | 185 | HIS | CE1 | O5 | D | 312 | 3.63 | van der Waals | D | 183-195 H: 1 | 185 | HIS | CE1 | O4 | D | 312 | 3.59 | van der Waals | D | 183-195 H: 1 | 185 | HIS | NE2 | C2 | D | 312 | 3.44 | H.Bond | D | 183-195 H: 1 | 185 | HIS | NE2 | O5 | D | 312 | 2.54 | H.Bond | D | 183-195 H: 1 | 185 | HIS | NE2 | C3 | D | 312 | 3.63 | H.Bond | D | 183-195 H: 1 | 185 | HIS | NE2 | C4 | D | 312 | 3.85 | H.Bond | D | 183-195 H: 1 | 185 | HIS | NE2 | O4 | D | 312 | 3.43 | H.Bond | D | 243-249 S: -1 | 245 | ARG | CZ | O4 | D | 312 | 3.74 | van der Waals | D | 243-249 S: -1 | 245 | ARG | NH1 | C5 | D | 312 | 3.29 | H.Bond | D | 243-249 S: -1 | 245 | ARG | NH1 | O3 | D | 312 | 3.46 | H.Bond | D | 243-249 S: -1 | 245 | ARG | NH1 | O4 | D | 312 | 2.47 | H.Bond | D | No SSE | 260 | PHE | CE1 | O4 | D | 312 | 3.75 | van der Waals | D | No SSE | 260 | PHE | CZ | C4 | D | 312 | 3.99 | van der Waals | D | No SSE | 260 | PHE | CZ | C5 | D | 312 | 3.72 | van der Waals | D | No SSE | 260 | PHE | CZ | O4 | D | 312 | 3.34 | van der Waals | D | Water | 335 | HOH | O | O1 | D | 312 | 2.7 | H.Bond | |