There are 11 SFM Motifs: |
---|
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
---|
4 | 1ITW | Isocitrate dehydrogenase | X-RAY | 1.95 | 0.193
|
---|
| Motif No./Chain | Mode | Bound Ligand /(Nbr. in PDB) | Show Details |
---|
| 1 / A |
> Structure: LHSLLHHHL
+5w
> Sequence: SNRRKMDYRDA
|
ICT /(743) |
[+] |
|
> Graphics rep1:
|
[+] |
|
> Graphics rep2:
|
[+] |
|
> Graphics rep3:
|
[+] |
| |
|
Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
---|
A | No SSE | 132 | SER | CB | O4 | A | 743 | 3.3 | van der Waals | A | No SSE | 132 | SER | OG | C5 | A | 743 | 3.33 | van der Waals | A | No SSE | 132 | SER | OG | O3 | A | 743 | 3.35 | H.Bond | A | No SSE | 132 | SER | OG | O4 | A | 743 | 2.62 | H.Bond | A | 134-139 H: 1 | 135 | ASN | CB | O3 | A | 743 | 3.68 | van der Waals | A | 134-139 H: 1 | 135 | ASN | CG | O3 | A | 743 | 3.65 | van der Waals | A | 134-139 H: 1 | 135 | ASN | ND2 | C3 | A | 743 | 3.76 | H.Bond | A | 134-139 H: 1 | 135 | ASN | ND2 | C4 | A | 743 | 3.97 | H.Bond | A | 134-139 H: 1 | 135 | ASN | ND2 | C5 | A | 743 | 3.36 | H.Bond | A | 134-139 H: 1 | 135 | ASN | ND2 | O3 | A | 743 | 2.73 | H.Bond | A | 134-139 H: 1 | 139 | ARG | CZ | O1 | A | 743 | 3.93 | van der Waals | A | 134-139 H: 1 | 139 | ARG | CZ | O5 | A | 743 | 3.93 | van der Waals | A | 134-139 H: 1 | 139 | ARG | NH1 | O3 | A | 743 | 3.82 | H.Bond | A | 134-139 H: 1 | 139 | ARG | NH1 | C6 | A | 743 | 3.84 | H.Bond | A | 134-139 H: 1 | 139 | ARG | NH1 | O5 | A | 743 | 2.97 | H.Bond | A | 134-139 H: 1 | 139 | ARG | NH2 | C1 | A | 743 | 3.93 | H.Bond | A | 134-139 H: 1 | 139 | ARG | NH2 | O1 | A | 743 | 2.87 | H.Bond | A | 143-146 S: -1 | 145 | ARG | CZ | O1 | A | 743 | 3.7 | van der Waals | A | 143-146 S: -1 | 145 | ARG | CZ | O2 | A | 743 | 3.86 | van der Waals | A | 143-146 S: -1 | 145 | ARG | NH1 | C1 | A | 743 | 3.79 | H.Bond | A | 143-146 S: -1 | 145 | ARG | NH1 | O1 | A | 743 | 3.66 | H.Bond | A | 143-146 S: -1 | 145 | ARG | NH1 | O2 | A | 743 | 3.06 | H.Bond | A | 143-146 S: -1 | 145 | ARG | NH2 | C1 | A | 743 | 3.73 | H.Bond | A | 143-146 S: -1 | 145 | ARG | NH2 | O1 | A | 743 | 2.86 | H.Bond | A | 143-146 S: -1 | 145 | ARG | NH2 | O2 | A | 743 | 3.76 | H.Bond | A | No SSE | 255 | LYS | CE | O6 | A | 743 | 3.38 | van der Waals | A | No SSE | 255 | LYS | NZ | O7 | A | 743 | 3.33 | H.Bond | A | No SSE | 255 | LYS | NZ | C4 | A | 743 | 3.91 | H.Bond | A | No SSE | 255 | LYS | NZ | C6 | A | 743 | 3.82 | H.Bond | A | No SSE | 255 | LYS | NZ | O6 | A | 743 | 3.05 | H.Bond | A | No SSE | 258 | MET | CB | O4 | A | 743 | 3.66 | van der Waals | A | No SSE | 258 | MET | CG | O4 | A | 743 | 3.47 | van der Waals | A | 348-359 H: 1 | 350 | ASP | OD1 | O7 | A | 743 | 3.1 | H.Bond | A | 417-424 H: 5 | 420 | TYR | CE2 | O3 | A | 743 | 3.99 | van der Waals | A | 417-424 H: 5 | 420 | TYR | CE2 | C6 | A | 743 | 3.65 | van der Waals | A | 417-424 H: 5 | 420 | TYR | CE2 | O5 | A | 743 | 3.53 | van der Waals | A | 417-424 H: 5 | 420 | TYR | CE2 | O6 | A | 743 | 3.18 | van der Waals | A | 417-424 H: 5 | 420 | TYR | CZ | C6 | A | 743 | 3.93 | van der Waals | A | 417-424 H: 5 | 420 | TYR | CZ | O5 | A | 743 | 3.76 | van der Waals | A | 417-424 H: 5 | 420 | TYR | CZ | O6 | A | 743 | 3.23 | van der Waals | A | 417-424 H: 5 | 420 | TYR | OH | C6 | A | 743 | 3.29 | van der Waals | A | 417-424 H: 5 | 420 | TYR | OH | O5 | A | 743 | 3.24 | H.Bond | A | 417-424 H: 5 | 420 | TYR | OH | O6 | A | 743 | 2.45 | H.Bond | A | 543-560 H: 1 | 547 | ARG | CZ | O5 | A | 743 | 3.46 | van der Waals | A | 543-560 H: 1 | 547 | ARG | NH1 | O5 | A | 743 | 3.34 | H.Bond | A | 543-560 H: 1 | 547 | ARG | NH2 | C6 | A | 743 | 3.77 | H.Bond | A | 543-560 H: 1 | 547 | ARG | NH2 | O5 | A | 743 | 2.74 | H.Bond | A | 543-560 H: 1 | 547 | ARG | NH2 | O6 | A | 743 | 3.94 | H.Bond | A | 543-560 H: 1 | 548 | ASP | CG | O6 | A | 743 | 3.6 | van der Waals | A | 543-560 H: 1 | 548 | ASP | OD1 | O6 | A | 743 | 3.71 | H.Bond | A | 543-560 H: 1 | 548 | ASP | OD2 | C1 | A | 743 | 3.9 | van der Waals | A | 543-560 H: 1 | 548 | ASP | OD2 | O2 | A | 743 | 3.01 | H.Bond | A | 543-560 H: 1 | 548 | ASP | OD2 | O7 | A | 743 | 3.26 | H.Bond | A | 543-560 H: 1 | 548 | ASP | OD2 | C6 | A | 743 | 3.74 | van der Waals | A | 543-560 H: 1 | 548 | ASP | OD2 | O5 | A | 743 | 3.88 | H.Bond | A | 543-560 H: 1 | 548 | ASP | OD2 | O6 | A | 743 | 3.59 | H.Bond | A | No SSE | 582 | ALA | O | C1 | A | 743 | 3.52 | van der Waals | A | No SSE | 582 | ALA | O | O1 | A | 743 | 3.78 | H.Bond | A | No SSE | 582 | ALA | O | O2 | A | 743 | 3.92 | H.Bond | A | No SSE | 582 | ALA | O | C2 | A | 743 | 3.6 | van der Waals | A | No SSE | 582 | ALA | O | O7 | A | 743 | 3.77 | H.Bond | A | No SSE | 582 | ALA | CB | O2 | A | 743 | 3.98 | van der Waals | A | Water | 749 | HOH | O | O3 | A | 743 | 2.55 | H.Bond | A | Water | 752 | HOH | O | O1 | A | 743 | 2.87 | H.Bond | A | Water | 850 | HOH | O | O7 | A | 743 | 2.76 | H.Bond | A | Water | 985 | HOH | O | O4 | A | 743 | 2.64 | H.Bond | A | Water | 1063 | HOH | O | O7 | A | 743 | 2.72 | H.Bond | |
| 2 / B |
> Structure: LHSLLHHHL
+5w
> Sequence: SNRRKMDYRDA
|
ICT /(744) |
[+] |
|
> Graphics rep1:
|
[+] |
|
> Graphics rep2:
|
[+] |
|
> Graphics rep3:
|
[+] |
| |
|
Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
---|
B | No SSE | 132 | SER | CB | O4 | B | 744 | 3.21 | van der Waals | B | No SSE | 132 | SER | OG | C5 | B | 744 | 3.31 | van der Waals | B | No SSE | 132 | SER | OG | O3 | B | 744 | 3.27 | H.Bond | B | No SSE | 132 | SER | OG | O4 | B | 744 | 2.64 | H.Bond | B | 134-139 H: 1 | 135 | ASN | CB | O3 | B | 744 | 3.74 | van der Waals | B | 134-139 H: 1 | 135 | ASN | CG | O3 | B | 744 | 3.72 | van der Waals | B | 134-139 H: 1 | 135 | ASN | ND2 | C3 | B | 744 | 3.87 | H.Bond | B | 134-139 H: 1 | 135 | ASN | ND2 | C5 | B | 744 | 3.41 | H.Bond | B | 134-139 H: 1 | 135 | ASN | ND2 | O3 | B | 744 | 2.79 | H.Bond | B | 134-139 H: 1 | 139 | ARG | CZ | O1 | B | 744 | 3.95 | van der Waals | B | 134-139 H: 1 | 139 | ARG | CZ | O5 | B | 744 | 3.93 | van der Waals | B | 134-139 H: 1 | 139 | ARG | NH1 | O3 | B | 744 | 3.77 | H.Bond | B | 134-139 H: 1 | 139 | ARG | NH1 | C6 | B | 744 | 3.91 | H.Bond | B | 134-139 H: 1 | 139 | ARG | NH1 | O5 | B | 744 | 3.02 | H.Bond | B | 134-139 H: 1 | 139 | ARG | NH2 | C1 | B | 744 | 3.85 | H.Bond | B | 134-139 H: 1 | 139 | ARG | NH2 | O1 | B | 744 | 2.82 | H.Bond | B | 134-139 H: 1 | 139 | ARG | NH2 | O5 | B | 744 | 3.94 | H.Bond | B | 143-146 S: -1 | 145 | ARG | CZ | O1 | B | 744 | 3.63 | van der Waals | B | 143-146 S: -1 | 145 | ARG | CZ | O2 | B | 744 | 3.8 | van der Waals | B | 143-146 S: -1 | 145 | ARG | NH1 | C1 | B | 744 | 3.83 | H.Bond | B | 143-146 S: -1 | 145 | ARG | NH1 | O1 | B | 744 | 3.71 | H.Bond | B | 143-146 S: -1 | 145 | ARG | NH1 | O2 | B | 744 | 3.08 | H.Bond | B | 143-146 S: -1 | 145 | ARG | NH2 | C1 | B | 744 | 3.58 | H.Bond | B | 143-146 S: -1 | 145 | ARG | NH2 | O1 | B | 744 | 2.72 | H.Bond | B | 143-146 S: -1 | 145 | ARG | NH2 | O2 | B | 744 | 3.62 | H.Bond | B | No SSE | 255 | LYS | CE | O6 | B | 744 | 3.19 | van der Waals | B | No SSE | 255 | LYS | NZ | O7 | B | 744 | 3.42 | H.Bond | B | No SSE | 255 | LYS | NZ | C4 | B | 744 | 3.8 | H.Bond | B | No SSE | 255 | LYS | NZ | C6 | B | 744 | 3.67 | H.Bond | B | No SSE | 255 | LYS | NZ | O6 | B | 744 | 2.86 | H.Bond | B | No SSE | 258 | MET | CB | O4 | B | 744 | 3.68 | van der Waals | B | No SSE | 258 | MET | CG | C5 | B | 744 | 3.99 | van der Waals | B | No SSE | 258 | MET | CG | O4 | B | 744 | 3.46 | van der Waals | B | 348-359 H: 1 | 350 | ASP | OD1 | O7 | B | 744 | 3.17 | H.Bond | B | 417-424 H: 5 | 420 | TYR | CE2 | O3 | B | 744 | 3.92 | van der Waals | B | 417-424 H: 5 | 420 | TYR | CE2 | C6 | B | 744 | 3.68 | van der Waals | B | 417-424 H: 5 | 420 | TYR | CE2 | O5 | B | 744 | 3.49 | van der Waals | B | 417-424 H: 5 | 420 | TYR | CE2 | O6 | B | 744 | 3.29 | van der Waals | B | 417-424 H: 5 | 420 | TYR | CZ | C6 | B | 744 | 3.92 | van der Waals | B | 417-424 H: 5 | 420 | TYR | CZ | O5 | B | 744 | 3.68 | van der Waals | B | 417-424 H: 5 | 420 | TYR | CZ | O6 | B | 744 | 3.29 | van der Waals | B | 417-424 H: 5 | 420 | TYR | OH | C6 | B | 744 | 3.23 | van der Waals | B | 417-424 H: 5 | 420 | TYR | OH | O5 | B | 744 | 3.1 | H.Bond | B | 417-424 H: 5 | 420 | TYR | OH | O6 | B | 744 | 2.46 | H.Bond | B | 543-560 H: 1 | 547 | ARG | CZ | O5 | B | 744 | 3.55 | van der Waals | B | 543-560 H: 1 | 547 | ARG | NH1 | O5 | B | 744 | 3.39 | H.Bond | B | 543-560 H: 1 | 547 | ARG | NH2 | C6 | B | 744 | 3.86 | H.Bond | B | 543-560 H: 1 | 547 | ARG | NH2 | O5 | B | 744 | 2.83 | H.Bond | B | 543-560 H: 1 | 548 | ASP | CG | O6 | B | 744 | 3.51 | van der Waals | B | 543-560 H: 1 | 548 | ASP | OD1 | O6 | B | 744 | 3.59 | H.Bond | B | 543-560 H: 1 | 548 | ASP | OD2 | C1 | B | 744 | 3.98 | van der Waals | B | 543-560 H: 1 | 548 | ASP | OD2 | O2 | B | 744 | 3.1 | H.Bond | B | 543-560 H: 1 | 548 | ASP | OD2 | O7 | B | 744 | 3.33 | H.Bond | B | 543-560 H: 1 | 548 | ASP | OD2 | C6 | B | 744 | 3.69 | van der Waals | B | 543-560 H: 1 | 548 | ASP | OD2 | O5 | B | 744 | 3.85 | H.Bond | B | 543-560 H: 1 | 548 | ASP | OD2 | O6 | B | 744 | 3.52 | H.Bond | B | No SSE | 582 | ALA | CA | O1 | B | 744 | 3.86 | van der Waals | B | No SSE | 582 | ALA | O | C1 | B | 744 | 3.46 | van der Waals | B | No SSE | 582 | ALA | O | O1 | B | 744 | 3.79 | H.Bond | B | No SSE | 582 | ALA | O | O2 | B | 744 | 3.83 | H.Bond | B | No SSE | 582 | ALA | O | C2 | B | 744 | 3.47 | van der Waals | B | No SSE | 582 | ALA | O | O7 | B | 744 | 3.49 | H.Bond | B | No SSE | 582 | ALA | CB | C1 | B | 744 | 3.86 | van der Waals | B | No SSE | 582 | ALA | CB | O1 | B | 744 | 3.75 | van der Waals | B | No SSE | 582 | ALA | CB | O2 | B | 744 | 3.68 | van der Waals | B | Water | 758 | HOH | O | O1 | B | 744 | 2.68 | H.Bond | B | Water | 763 | HOH | O | O3 | B | 744 | 2.59 | H.Bond | B | Water | 883 | HOH | O | O7 | B | 744 | 2.75 | H.Bond | B | Water | 895 | HOH | O | O4 | B | 744 | 2.64 | H.Bond | B | Water | 944 | HOH | O | O7 | B | 744 | 2.79 | H.Bond | |
| 3 / C |
> Structure: LHSLLHHHL
+5w
> Sequence: SNRRKMDYRDA
|
ICT /(743) |
[+] |
|
> Graphics rep1:
|
[+] |
|
> Graphics rep2:
|
[+] |
|
> Graphics rep3:
|
[+] |
| |
|
Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
---|
C | No SSE | 132 | SER | CB | O4 | C | 743 | 3.18 | van der Waals | C | No SSE | 132 | SER | OG | C5 | C | 743 | 3.3 | van der Waals | C | No SSE | 132 | SER | OG | O3 | C | 743 | 3.32 | H.Bond | C | No SSE | 132 | SER | OG | O4 | C | 743 | 2.55 | H.Bond | C | 134-139 H: 1 | 135 | ASN | CB | O3 | C | 743 | 3.58 | van der Waals | C | 134-139 H: 1 | 135 | ASN | CG | O3 | C | 743 | 3.54 | van der Waals | C | 134-139 H: 1 | 135 | ASN | ND2 | C3 | C | 743 | 3.89 | H.Bond | C | 134-139 H: 1 | 135 | ASN | ND2 | C5 | C | 743 | 3.34 | H.Bond | C | 134-139 H: 1 | 135 | ASN | ND2 | O3 | C | 743 | 2.61 | H.Bond | C | 134-139 H: 1 | 139 | ARG | CZ | O1 | C | 743 | 3.97 | van der Waals | C | 134-139 H: 1 | 139 | ARG | CZ | O5 | C | 743 | 3.87 | van der Waals | C | 134-139 H: 1 | 139 | ARG | NH1 | O3 | C | 743 | 3.74 | H.Bond | C | 134-139 H: 1 | 139 | ARG | NH1 | C6 | C | 743 | 3.87 | H.Bond | C | 134-139 H: 1 | 139 | ARG | NH1 | O5 | C | 743 | 2.95 | H.Bond | C | 134-139 H: 1 | 139 | ARG | NH2 | C1 | C | 743 | 3.89 | H.Bond | C | 134-139 H: 1 | 139 | ARG | NH2 | O1 | C | 743 | 2.85 | H.Bond | C | 134-139 H: 1 | 139 | ARG | NH2 | O5 | C | 743 | 3.9 | H.Bond | C | 143-146 S: -1 | 145 | ARG | CZ | O1 | C | 743 | 3.56 | van der Waals | C | 143-146 S: -1 | 145 | ARG | CZ | O2 | C | 743 | 3.67 | van der Waals | C | 143-146 S: -1 | 145 | ARG | NH1 | C1 | C | 743 | 3.78 | H.Bond | C | 143-146 S: -1 | 145 | ARG | NH1 | O1 | C | 743 | 3.7 | H.Bond | C | 143-146 S: -1 | 145 | ARG | NH1 | O2 | C | 743 | 3 | H.Bond | C | 143-146 S: -1 | 145 | ARG | NH2 | C1 | C | 743 | 3.43 | H.Bond | C | 143-146 S: -1 | 145 | ARG | NH2 | O1 | C | 743 | 2.59 | H.Bond | C | 143-146 S: -1 | 145 | ARG | NH2 | O2 | C | 743 | 3.46 | H.Bond | C | No SSE | 255 | LYS | CE | O6 | C | 743 | 3.27 | van der Waals | C | No SSE | 255 | LYS | NZ | O7 | C | 743 | 3.39 | H.Bond | C | No SSE | 255 | LYS | NZ | C4 | C | 743 | 3.71 | H.Bond | C | No SSE | 255 | LYS | NZ | C6 | C | 743 | 3.67 | H.Bond | C | No SSE | 255 | LYS | NZ | O6 | C | 743 | 2.9 | H.Bond | C | No SSE | 258 | MET | CB | O4 | C | 743 | 3.83 | van der Waals | C | No SSE | 258 | MET | CG | O4 | C | 743 | 3.58 | van der Waals | C | 348-359 H: 1 | 350 | ASP | OD1 | O7 | C | 743 | 3.14 | H.Bond | C | 417-424 H: 5 | 420 | TYR | CE2 | C6 | C | 743 | 3.57 | van der Waals | C | 417-424 H: 5 | 420 | TYR | CE2 | O5 | C | 743 | 3.37 | van der Waals | C | 417-424 H: 5 | 420 | TYR | CE2 | O6 | C | 743 | 3.14 | van der Waals | C | 417-424 H: 5 | 420 | TYR | CZ | C6 | C | 743 | 3.86 | van der Waals | C | 417-424 H: 5 | 420 | TYR | CZ | O5 | C | 743 | 3.65 | van der Waals | C | 417-424 H: 5 | 420 | TYR | CZ | O6 | C | 743 | 3.18 | van der Waals | C | 417-424 H: 5 | 420 | TYR | OH | C6 | C | 743 | 3.24 | van der Waals | C | 417-424 H: 5 | 420 | TYR | OH | O5 | C | 743 | 3.17 | H.Bond | C | 417-424 H: 5 | 420 | TYR | OH | O6 | C | 743 | 2.42 | H.Bond | C | 543-560 H: 1 | 547 | ARG | CZ | O5 | C | 743 | 3.55 | van der Waals | C | 543-560 H: 1 | 547 | ARG | NH1 | O5 | C | 743 | 3.48 | H.Bond | C | 543-560 H: 1 | 547 | ARG | NH2 | C6 | C | 743 | 3.79 | H.Bond | C | 543-560 H: 1 | 547 | ARG | NH2 | O5 | C | 743 | 2.75 | H.Bond | C | 543-560 H: 1 | 547 | ARG | NH2 | O6 | C | 743 | 3.98 | H.Bond | C | 543-560 H: 1 | 548 | ASP | CG | O6 | C | 743 | 3.57 | van der Waals | C | 543-560 H: 1 | 548 | ASP | OD1 | O6 | C | 743 | 3.61 | H.Bond | C | 543-560 H: 1 | 548 | ASP | OD2 | O2 | C | 743 | 3.16 | H.Bond | C | 543-560 H: 1 | 548 | ASP | OD2 | O7 | C | 743 | 3.3 | H.Bond | C | 543-560 H: 1 | 548 | ASP | OD2 | C6 | C | 743 | 3.81 | van der Waals | C | 543-560 H: 1 | 548 | ASP | OD2 | O6 | C | 743 | 3.65 | H.Bond | C | No SSE | 582 | ALA | CA | O1 | C | 743 | 3.95 | van der Waals | C | No SSE | 582 | ALA | O | C1 | C | 743 | 3.59 | van der Waals | C | No SSE | 582 | ALA | O | O1 | C | 743 | 3.87 | H.Bond | C | No SSE | 582 | ALA | O | O2 | C | 743 | 3.96 | H.Bond | C | No SSE | 582 | ALA | O | C2 | C | 743 | 3.64 | van der Waals | C | No SSE | 582 | ALA | O | O7 | C | 743 | 3.72 | H.Bond | C | No SSE | 582 | ALA | CB | C1 | C | 743 | 3.92 | van der Waals | C | No SSE | 582 | ALA | CB | O1 | C | 743 | 3.8 | van der Waals | C | No SSE | 582 | ALA | CB | O2 | C | 743 | 3.73 | van der Waals | C | Water | 770 | HOH | O | O3 | C | 743 | 2.67 | H.Bond | C | Water | 772 | HOH | O | O7 | C | 743 | 2.84 | H.Bond | C | Water | 801 | HOH | O | O1 | C | 743 | 2.81 | H.Bond | C | Water | 1003 | HOH | O | O7 | C | 743 | 2.67 | H.Bond | C | Water | 1031 | HOH | O | O4 | C | 743 | 2.78 | H.Bond | |
| 4 / D |
> Structure: LHSLLHHHL
+5w
> Sequence: SNRRKMDYRDA
|
ICT /(743) |
[+] |
|
> Graphics rep1:
|
[+] |
|
> Graphics rep2:
|
[+] |
|
> Graphics rep3:
|
[+] |
| |
|
Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
---|
D | No SSE | 132 | SER | CB | O4 | D | 743 | 3.3 | van der Waals | D | No SSE | 132 | SER | OG | C5 | D | 743 | 3.32 | van der Waals | D | No SSE | 132 | SER | OG | O3 | D | 743 | 3.32 | H.Bond | D | No SSE | 132 | SER | OG | O4 | D | 743 | 2.62 | H.Bond | D | 134-139 H: 1 | 135 | ASN | CB | O3 | D | 743 | 3.68 | van der Waals | D | 134-139 H: 1 | 135 | ASN | CG | O3 | D | 743 | 3.62 | van der Waals | D | 134-139 H: 1 | 135 | ASN | OD1 | C3 | D | 743 | 3.83 | van der Waals | D | 134-139 H: 1 | 135 | ASN | OD1 | C5 | D | 743 | 3.42 | van der Waals | D | 134-139 H: 1 | 135 | ASN | OD1 | O3 | D | 743 | 2.81 | H.Bond | D | 134-139 H: 1 | 139 | ARG | CZ | O1 | D | 743 | 3.84 | van der Waals | D | 134-139 H: 1 | 139 | ARG | CZ | O5 | D | 743 | 3.92 | van der Waals | D | 134-139 H: 1 | 139 | ARG | NH1 | O3 | D | 743 | 3.87 | H.Bond | D | 134-139 H: 1 | 139 | ARG | NH1 | C6 | D | 743 | 3.84 | H.Bond | D | 134-139 H: 1 | 139 | ARG | NH1 | O5 | D | 743 | 2.94 | H.Bond | D | 134-139 H: 1 | 139 | ARG | NH2 | C1 | D | 743 | 3.92 | H.Bond | D | 134-139 H: 1 | 139 | ARG | NH2 | O1 | D | 743 | 2.79 | H.Bond | D | 143-146 S: -1 | 145 | ARG | CZ | O1 | D | 743 | 3.65 | van der Waals | D | 143-146 S: -1 | 145 | ARG | CZ | O2 | D | 743 | 3.8 | van der Waals | D | 143-146 S: -1 | 145 | ARG | NH1 | C1 | D | 743 | 3.71 | H.Bond | D | 143-146 S: -1 | 145 | ARG | NH1 | O1 | D | 743 | 3.59 | H.Bond | D | 143-146 S: -1 | 145 | ARG | NH1 | O2 | D | 743 | 2.98 | H.Bond | D | 143-146 S: -1 | 145 | ARG | NH2 | C1 | D | 743 | 3.7 | H.Bond | D | 143-146 S: -1 | 145 | ARG | NH2 | O1 | D | 743 | 2.82 | H.Bond | D | 143-146 S: -1 | 145 | ARG | NH2 | O2 | D | 743 | 3.73 | H.Bond | D | No SSE | 255 | LYS | CE | O6 | D | 743 | 3.34 | van der Waals | D | No SSE | 255 | LYS | NZ | O7 | D | 743 | 3.41 | H.Bond | D | No SSE | 255 | LYS | NZ | C4 | D | 743 | 3.85 | H.Bond | D | No SSE | 255 | LYS | NZ | C6 | D | 743 | 3.81 | H.Bond | D | No SSE | 255 | LYS | NZ | O6 | D | 743 | 3 | H.Bond | D | No SSE | 258 | MET | CB | O4 | D | 743 | 3.73 | van der Waals | D | No SSE | 258 | MET | CG | O4 | D | 743 | 3.57 | van der Waals | D | 348-359 H: 1 | 350 | ASP | OD1 | O7 | D | 743 | 3.17 | H.Bond | D | 417-424 H: 5 | 420 | TYR | CE2 | O3 | D | 743 | 3.94 | van der Waals | D | 417-424 H: 5 | 420 | TYR | CE2 | C6 | D | 743 | 3.73 | van der Waals | D | 417-424 H: 5 | 420 | TYR | CE2 | O5 | D | 743 | 3.6 | van der Waals | D | 417-424 H: 5 | 420 | TYR | CE2 | O6 | D | 743 | 3.3 | van der Waals | D | 417-424 H: 5 | 420 | TYR | CZ | C6 | D | 743 | 3.95 | van der Waals | D | 417-424 H: 5 | 420 | TYR | CZ | O5 | D | 743 | 3.78 | van der Waals | D | 417-424 H: 5 | 420 | TYR | CZ | O6 | D | 743 | 3.27 | van der Waals | D | 417-424 H: 5 | 420 | TYR | OH | C6 | D | 743 | 3.25 | van der Waals | D | 417-424 H: 5 | 420 | TYR | OH | O5 | D | 743 | 3.21 | H.Bond | D | 417-424 H: 5 | 420 | TYR | OH | O6 | D | 743 | 2.41 | H.Bond | D | 543-560 H: 1 | 547 | ARG | CZ | O5 | D | 743 | 3.47 | van der Waals | D | 543-560 H: 1 | 547 | ARG | NH1 | O5 | D | 743 | 3.32 | H.Bond | D | 543-560 H: 1 | 547 | ARG | NH2 | C6 | D | 743 | 3.77 | H.Bond | D | 543-560 H: 1 | 547 | ARG | NH2 | O5 | D | 743 | 2.77 | H.Bond | D | 543-560 H: 1 | 547 | ARG | NH2 | O6 | D | 743 | 3.89 | H.Bond | D | 543-560 H: 1 | 548 | ASP | CG | O6 | D | 743 | 3.47 | van der Waals | D | 543-560 H: 1 | 548 | ASP | OD1 | O6 | D | 743 | 3.6 | H.Bond | D | 543-560 H: 1 | 548 | ASP | OD2 | C1 | D | 743 | 3.92 | van der Waals | D | 543-560 H: 1 | 548 | ASP | OD2 | O2 | D | 743 | 3.11 | H.Bond | D | 543-560 H: 1 | 548 | ASP | OD2 | O7 | D | 743 | 3.26 | H.Bond | D | 543-560 H: 1 | 548 | ASP | OD2 | C6 | D | 743 | 3.67 | van der Waals | D | 543-560 H: 1 | 548 | ASP | OD2 | O5 | D | 743 | 3.87 | H.Bond | D | 543-560 H: 1 | 548 | ASP | OD2 | O6 | D | 743 | 3.48 | H.Bond | D | No SSE | 582 | ALA | CA | O1 | D | 743 | 3.94 | van der Waals | D | No SSE | 582 | ALA | O | C1 | D | 743 | 3.35 | van der Waals | D | No SSE | 582 | ALA | O | O1 | D | 743 | 3.73 | H.Bond | D | No SSE | 582 | ALA | O | O2 | D | 743 | 3.66 | H.Bond | D | No SSE | 582 | ALA | O | C2 | D | 743 | 3.43 | van der Waals | D | No SSE | 582 | ALA | O | O7 | D | 743 | 3.57 | H.Bond | D | No SSE | 582 | ALA | CB | C1 | D | 743 | 3.91 | van der Waals | D | No SSE | 582 | ALA | CB | O1 | D | 743 | 3.83 | van der Waals | D | No SSE | 582 | ALA | CB | O2 | D | 743 | 3.63 | van der Waals | D | Water | 754 | HOH | O | O3 | D | 743 | 2.69 | H.Bond | D | Water | 809 | HOH | O | O2 | D | 743 | 3 | H.Bond | D | Water | 809 | HOH | O | O7 | D | 743 | 2.83 | H.Bond | D | Water | 820 | HOH | O | O1 | D | 743 | 2.83 | H.Bond | D | Water | 1123 | HOH | O | O7 | D | 743 | 2.69 | H.Bond | D | Water | 1203 | HOH | O | O4 | D | 743 | 2.76 | H.Bond | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
---|
2 | 1XKD | Isocitrate dehydrogenase | X-RAY | 2.30 | 0.226
|
---|
| Motif No./Chain | Mode | Bound Ligand /(Nbr. in PDB) | Show Details |
---|
| 1 / A |
> Structure: SSHH
+1w
> Sequence: RRYD
|
ICT /(1002) |
[+] |
|
> Graphics rep1:
|
[+] |
|
> Graphics rep2:
|
[+] |
|
> Graphics rep3:
|
[+] |
| |
|
Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
---|
A | 133-138 S: -1 | 136 | ARG | CZ | O2 | A | 1002 | 3.66 | van der Waals | A | 133-138 S: -1 | 136 | ARG | NH1 | C1 | A | 1002 | 3.49 | H.Bond | A | 133-138 S: -1 | 136 | ARG | NH1 | O1 | A | 1002 | 3.35 | H.Bond | A | 133-138 S: -1 | 136 | ARG | NH1 | O2 | A | 1002 | 2.85 | H.Bond | A | 133-138 S: -1 | 136 | ARG | NH2 | O2 | A | 1002 | 3.61 | H.Bond | A | 155-160 S: -1 | 159 | ARG | CZ | O5 | A | 1002 | 3.41 | van der Waals | A | 155-160 S: -1 | 159 | ARG | NH1 | C6 | A | 1002 | 3.6 | H.Bond | A | 155-160 S: -1 | 159 | ARG | NH1 | O5 | A | 1002 | 2.69 | H.Bond | A | 155-160 S: -1 | 159 | ARG | NH1 | O6 | A | 1002 | 3.79 | H.Bond | A | 155-160 S: -1 | 159 | ARG | NH2 | O2 | A | 1002 | 3.44 | H.Bond | A | 155-160 S: -1 | 159 | ARG | NH2 | O5 | A | 1002 | 3.3 | H.Bond | A | 163-168 H: 5 | 166 | TYR | CE2 | O6 | A | 1002 | 3.65 | van der Waals | A | 306-321 H: 1 | 311 | ASP | CG | O7 | A | 1002 | 3.96 | van der Waals | A | 306-321 H: 1 | 311 | ASP | CG | O6 | A | 1002 | 3.43 | van der Waals | A | 306-321 H: 1 | 311 | ASP | OD1 | O7 | A | 1002 | 3.91 | H.Bond | A | 306-321 H: 1 | 311 | ASP | OD1 | O6 | A | 1002 | 3.11 | H.Bond | A | 306-321 H: 1 | 311 | ASP | OD2 | O2 | A | 1002 | 3.27 | H.Bond | A | 306-321 H: 1 | 311 | ASP | OD2 | O7 | A | 1002 | 3.26 | H.Bond | A | 306-321 H: 1 | 311 | ASP | OD2 | C6 | A | 1002 | 3.98 | van der Waals | A | 306-321 H: 1 | 311 | ASP | OD2 | O6 | A | 1002 | 3.44 | H.Bond | A | Water | 1136 | HOH | O | O7 | A | 1002 | 2.6 | H.Bond | |
| 2 / B |
> Structure: LHSSHHL
+1w
> Sequence: TSNVRRRYDV
|
ICT /(1004) |
[+] |
|
> Graphics rep1:
|
[+] |
|
> Graphics rep2:
|
[+] |
|
> Graphics rep3:
|
[+] |
| |
|
Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
---|
B | No SSE | 112 | THR | CB | O3 | B | 1004 | 3.36 | van der Waals | B | No SSE | 112 | THR | OG1 | C5 | B | 1004 | 3.82 | van der Waals | B | No SSE | 112 | THR | OG1 | O3 | B | 1004 | 2.86 | H.Bond | B | 120-129 H: 1 | 120 | SER | CB | O4 | B | 1004 | 3.28 | van der Waals | B | 120-129 H: 1 | 120 | SER | OG | C5 | B | 1004 | 3.51 | van der Waals | B | 120-129 H: 1 | 120 | SER | OG | O3 | B | 1004 | 3.76 | H.Bond | B | 120-129 H: 1 | 120 | SER | OG | O4 | B | 1004 | 2.53 | H.Bond | B | 120-129 H: 1 | 122 | ASN | CB | O4 | B | 1004 | 3.68 | van der Waals | B | 120-129 H: 1 | 122 | ASN | ND2 | C5 | B | 1004 | 3.67 | H.Bond | B | 120-129 H: 1 | 122 | ASN | ND2 | O3 | B | 1004 | 3.61 | H.Bond | B | 120-129 H: 1 | 122 | ASN | ND2 | O4 | B | 1004 | 3.41 | H.Bond | B | 120-129 H: 1 | 123 | VAL | CG2 | O4 | B | 1004 | 3.93 | van der Waals | B | 120-129 H: 1 | 126 | ARG | CZ | O1 | B | 1004 | 3.71 | van der Waals | B | 120-129 H: 1 | 126 | ARG | CZ | O5 | B | 1004 | 3.85 | van der Waals | B | 120-129 H: 1 | 126 | ARG | NH1 | O1 | B | 1004 | 3.98 | H.Bond | B | 120-129 H: 1 | 126 | ARG | NH1 | C6 | B | 1004 | 3.84 | H.Bond | B | 120-129 H: 1 | 126 | ARG | NH1 | O5 | B | 1004 | 2.91 | H.Bond | B | 120-129 H: 1 | 126 | ARG | NH2 | C1 | B | 1004 | 3.61 | H.Bond | B | 120-129 H: 1 | 126 | ARG | NH2 | O1 | B | 1004 | 2.61 | H.Bond | B | 120-129 H: 1 | 126 | ARG | NH2 | O5 | B | 1004 | 3.9 | H.Bond | B | 133-138 S: -1 | 136 | ARG | CZ | O1 | B | 1004 | 3.92 | van der Waals | B | 133-138 S: -1 | 136 | ARG | CZ | O2 | B | 1004 | 3.28 | van der Waals | B | 133-138 S: -1 | 136 | ARG | NH1 | C1 | B | 1004 | 3.21 | H.Bond | B | 133-138 S: -1 | 136 | ARG | NH1 | O1 | B | 1004 | 2.79 | H.Bond | B | 133-138 S: -1 | 136 | ARG | NH1 | O2 | B | 1004 | 2.83 | H.Bond | B | 133-138 S: -1 | 136 | ARG | NH2 | C1 | B | 1004 | 3.93 | H.Bond | B | 133-138 S: -1 | 136 | ARG | NH2 | O2 | B | 1004 | 2.87 | H.Bond | B | 155-160 S: -1 | 159 | ARG | CZ | O5 | B | 1004 | 3.54 | van der Waals | B | 155-160 S: -1 | 159 | ARG | NH1 | O5 | B | 1004 | 2.98 | H.Bond | B | 155-160 S: -1 | 159 | ARG | NH2 | O2 | B | 1004 | 3.41 | H.Bond | B | 155-160 S: -1 | 159 | ARG | NH2 | O5 | B | 1004 | 3.22 | H.Bond | B | 163-168 H: 5 | 166 | TYR | CE2 | C6 | B | 1004 | 3.79 | van der Waals | B | 163-168 H: 5 | 166 | TYR | CE2 | O5 | B | 1004 | 3.49 | van der Waals | B | 163-168 H: 5 | 166 | TYR | CE2 | O6 | B | 1004 | 3.39 | van der Waals | B | 163-168 H: 5 | 166 | TYR | CZ | O5 | B | 1004 | 3.87 | van der Waals | B | 163-168 H: 5 | 166 | TYR | CZ | O6 | B | 1004 | 3.49 | van der Waals | B | 163-168 H: 5 | 166 | TYR | OH | C6 | B | 1004 | 3.45 | van der Waals | B | 163-168 H: 5 | 166 | TYR | OH | O5 | B | 1004 | 3.39 | H.Bond | B | 163-168 H: 5 | 166 | TYR | OH | O6 | B | 1004 | 2.73 | H.Bond | B | 306-321 H: 1 | 311 | ASP | OD2 | C1 | B | 1004 | 3.97 | van der Waals | B | 306-321 H: 1 | 311 | ASP | OD2 | O2 | B | 1004 | 3.16 | H.Bond | B | 306-321 H: 1 | 311 | ASP | OD2 | O7 | B | 1004 | 3.24 | H.Bond | B | 306-321 H: 1 | 311 | ASP | OD2 | C6 | B | 1004 | 3.92 | van der Waals | B | 306-321 H: 1 | 311 | ASP | OD2 | O5 | B | 1004 | 3.82 | H.Bond | B | 306-321 H: 1 | 311 | ASP | OD2 | O6 | B | 1004 | 3.98 | H.Bond | B | No SSE | 342 | VAL | O | C1 | B | 1004 | 3.84 | van der Waals | B | No SSE | 342 | VAL | O | O1 | B | 1004 | 3.91 | H.Bond | B | No SSE | 342 | VAL | O | O2 | B | 1004 | 3.86 | H.Bond | B | Water | 1007 | HOH | O | O7 | B | 1004 | 2.96 | H.Bond | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
---|
3 | 2UXR | Isocitrate dehydrogenase | X-RAY | 2.30 | 0.195
|
---|
| Motif No./Chain | Mode | Bound Ligand /(Nbr. in PDB) | Show Details |
---|
| 1 / A |
> Structure: SSHHLLH
+2w
> Sequence: TSNRRRYDA
|
ICT /(1403) |
[+] |
|
> Graphics rep1:
|
[+] |
|
> Graphics rep2:
|
[+] |
|
> Graphics rep3:
|
[+] |
| |
|
Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
---|
A | No SSE | 76 | THR | CB | O3 | A | 1403 | 3.29 | van der Waals | A | No SSE | 76 | THR | OG1 | C5 | A | 1403 | 3.34 | van der Waals | A | No SSE | 76 | THR | OG1 | O3 | A | 1403 | 2.62 | H.Bond | A | No SSE | 76 | THR | OG1 | O4 | A | 1403 | 3.62 | H.Bond | A | No SSE | 76 | THR | CG2 | O3 | A | 1403 | 3.91 | van der Waals | A | 93-103 H: 1 | 93 | SER | CB | O3 | A | 1403 | 3.85 | van der Waals | A | 93-103 H: 1 | 93 | SER | CB | O4 | A | 1403 | 3.45 | van der Waals | A | 93-103 H: 1 | 93 | SER | OG | C5 | A | 1403 | 3.46 | van der Waals | A | 93-103 H: 1 | 93 | SER | OG | O3 | A | 1403 | 3.62 | H.Bond | A | 93-103 H: 1 | 93 | SER | OG | O4 | A | 1403 | 2.48 | H.Bond | A | 93-103 H: 1 | 95 | ASN | CB | O4 | A | 1403 | 3.44 | van der Waals | A | 93-103 H: 1 | 95 | ASN | CG | O4 | A | 1403 | 3.66 | van der Waals | A | 93-103 H: 1 | 95 | ASN | OD1 | C3 | A | 1403 | 3.67 | van der Waals | A | 93-103 H: 1 | 95 | ASN | OD1 | C4 | A | 1403 | 3.82 | van der Waals | A | 93-103 H: 1 | 95 | ASN | OD1 | C5 | A | 1403 | 3.68 | van der Waals | A | 93-103 H: 1 | 95 | ASN | OD1 | O4 | A | 1403 | 3.05 | H.Bond | A | 93-103 H: 1 | 99 | ARG | CZ | O2 | A | 1403 | 3.86 | van der Waals | A | 93-103 H: 1 | 99 | ARG | CZ | O6 | A | 1403 | 3.69 | van der Waals | A | 93-103 H: 1 | 99 | ARG | NH1 | C6 | A | 1403 | 3.76 | H.Bond | A | 93-103 H: 1 | 99 | ARG | NH1 | O6 | A | 1403 | 2.77 | H.Bond | A | 93-103 H: 1 | 99 | ARG | NH2 | C1 | A | 1403 | 3.88 | H.Bond | A | 93-103 H: 1 | 99 | ARG | NH2 | O2 | A | 1403 | 2.82 | H.Bond | A | 93-103 H: 1 | 99 | ARG | NH2 | O6 | A | 1403 | 3.73 | H.Bond | A | 105-110 S: -1 | 108 | ARG | CZ | O1 | A | 1403 | 3.62 | van der Waals | A | 105-110 S: -1 | 108 | ARG | CZ | O2 | A | 1403 | 3.72 | van der Waals | A | 105-110 S: -1 | 108 | ARG | NH1 | C1 | A | 1403 | 3.77 | H.Bond | A | 105-110 S: -1 | 108 | ARG | NH1 | O1 | A | 1403 | 2.9 | H.Bond | A | 105-110 S: -1 | 108 | ARG | NH1 | O2 | A | 1403 | 3.78 | H.Bond | A | 105-110 S: -1 | 108 | ARG | NH2 | C1 | A | 1403 | 3.58 | H.Bond | A | 105-110 S: -1 | 108 | ARG | NH2 | O1 | A | 1403 | 3.5 | H.Bond | A | 105-110 S: -1 | 108 | ARG | NH2 | O2 | A | 1403 | 2.82 | H.Bond | A | 128-132 S: -1 | 131 | ARG | CZ | O6 | A | 1403 | 3.39 | van der Waals | A | 128-132 S: -1 | 131 | ARG | NH1 | C1 | A | 1403 | 3.88 | H.Bond | A | 128-132 S: -1 | 131 | ARG | NH1 | O1 | A | 1403 | 3.43 | H.Bond | A | 128-132 S: -1 | 131 | ARG | NH1 | O2 | A | 1403 | 3.88 | H.Bond | A | 128-132 S: -1 | 131 | ARG | NH1 | O6 | A | 1403 | 3.09 | H.Bond | A | 128-132 S: -1 | 131 | ARG | NH2 | C6 | A | 1403 | 3.96 | H.Bond | A | 128-132 S: -1 | 131 | ARG | NH2 | O6 | A | 1403 | 2.89 | H.Bond | A | 135-140 H: 5 | 138 | TYR | CE1 | C6 | A | 1403 | 3.89 | van der Waals | A | 135-140 H: 5 | 138 | TYR | CE1 | O5 | A | 1403 | 3.37 | van der Waals | A | 135-140 H: 5 | 138 | TYR | CE1 | O6 | A | 1403 | 3.82 | van der Waals | A | 135-140 H: 5 | 138 | TYR | CZ | O5 | A | 1403 | 3.44 | van der Waals | A | 135-140 H: 5 | 138 | TYR | CZ | O6 | A | 1403 | 3.81 | van der Waals | A | 135-140 H: 5 | 138 | TYR | OH | C6 | A | 1403 | 3.36 | van der Waals | A | 135-140 H: 5 | 138 | TYR | OH | O5 | A | 1403 | 2.65 | H.Bond | A | 135-140 H: 5 | 138 | TYR | OH | O6 | A | 1403 | 3.25 | H.Bond | A | 267-283 H: 1 | 272 | ASP | CG | O5 | A | 1403 | 3.99 | van der Waals | A | 267-283 H: 1 | 272 | ASP | OD1 | C1 | A | 1403 | 3.75 | van der Waals | A | 267-283 H: 1 | 272 | ASP | OD1 | O1 | A | 1403 | 2.84 | H.Bond | A | 267-283 H: 1 | 272 | ASP | OD1 | O7 | A | 1403 | 3.37 | H.Bond | A | 267-283 H: 1 | 272 | ASP | OD1 | C6 | A | 1403 | 3.76 | van der Waals | A | 267-283 H: 1 | 272 | ASP | OD1 | O5 | A | 1403 | 3.76 | H.Bond | A | 267-283 H: 1 | 272 | ASP | OD1 | O6 | A | 1403 | 3.68 | H.Bond | A | No SSE | 304 | ALA | O | C1 | A | 1403 | 3.41 | van der Waals | A | No SSE | 304 | ALA | O | O1 | A | 1403 | 3.28 | H.Bond | A | No SSE | 304 | ALA | O | O2 | A | 1403 | 3.74 | H.Bond | A | No SSE | 304 | ALA | O | C2 | A | 1403 | 3.97 | van der Waals | A | Water | 2102 | HOH | O | O1 | A | 1403 | 2.97 | H.Bond | A | Water | 2136 | HOH | O | O3 | A | 1403 | 2.48 | H.Bond | |
| 2 / A |
> Structure: LLHL
+1w
> Sequence: LHGVHTN
|
ICT /(1404) |
[+] |
|
> Graphics rep1:
|
[+] |
|
> Graphics rep2:
|
[+] |
|
> Graphics rep3:
|
[+] |
| |
|
Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
---|
A | No SSE | 285 | LEU | CD1 | O2 | A | 1404 | 3.14 | van der Waals | A | No SSE | 305 | HIS | CA | O2 | A | 1404 | 3.94 | van der Waals | A | No SSE | 305 | HIS | CB | C1 | A | 1404 | 3.95 | van der Waals | A | No SSE | 305 | HIS | CB | O2 | A | 1404 | 3.29 | van der Waals | A | No SSE | 305 | HIS | CB | O7 | A | 1404 | 3.68 | van der Waals | A | No SSE | 305 | HIS | CG | O7 | A | 1404 | 3.46 | van der Waals | A | No SSE | 305 | HIS | ND1 | O7 | A | 1404 | 3.59 | H.Bond | A | No SSE | 305 | HIS | CD2 | O7 | A | 1404 | 3.82 | van der Waals | A | No SSE | 306 | GLY | N | C1 | A | 1404 | 3.74 | H.Bond | A | No SSE | 306 | GLY | N | O1 | A | 1404 | 3.63 | H.Bond | A | No SSE | 306 | GLY | N | O2 | A | 1404 | 3.27 | H.Bond | A | No SSE | 306 | GLY | CA | O1 | A | 1404 | 3.78 | van der Waals | A | No SSE | 306 | GLY | C | O1 | A | 1404 | 3.62 | van der Waals | A | No SSE | 306 | GLY | O | O1 | A | 1404 | 3.62 | H.Bond | A | 308-317 H: 1 | 308 | VAL | N | O1 | A | 1404 | 3.5 | H.Bond | A | 308-317 H: 1 | 308 | VAL | CA | O1 | A | 1404 | 3.7 | van der Waals | A | 308-317 H: 1 | 308 | VAL | CG1 | C6 | A | 1404 | 3.75 | van der Waals | A | 308-317 H: 1 | 308 | VAL | CG1 | O5 | A | 1404 | 3.92 | van der Waals | A | 308-317 H: 1 | 308 | VAL | CG1 | O6 | A | 1404 | 3.86 | van der Waals | A | 308-317 H: 1 | 308 | VAL | CG2 | O1 | A | 1404 | 3.81 | van der Waals | A | 308-317 H: 1 | 308 | VAL | CG2 | C2 | A | 1404 | 3.84 | van der Waals | A | 308-317 H: 1 | 308 | VAL | CG2 | O3 | A | 1404 | 3.76 | van der Waals | A | 308-317 H: 1 | 311 | HIS | CE1 | O4 | A | 1404 | 3.77 | van der Waals | A | No SSE | 323 | THR | CA | O4 | A | 1404 | 3.91 | van der Waals | A | No SSE | 323 | THR | CG2 | O3 | A | 1404 | 3.72 | van der Waals | A | No SSE | 324 | ASN | N | O3 | A | 1404 | 3.96 | H.Bond | A | No SSE | 324 | ASN | N | O4 | A | 1404 | 3.37 | H.Bond | A | No SSE | 324 | ASN | O | O3 | A | 1404 | 3.9 | H.Bond | A | Water | 2128 | HOH | O | C4 | A | 1404 | 2.55 | H.Bond | |
| 3 / B |
> Structure: SSHHSLLH
+1w
> Sequence: TSNRRRYDEA
|
ICT /(1397) |
[+] |
|
> Graphics rep1:
|
[+] |
|
> Graphics rep2:
|
[+] |
|
> Graphics rep3:
|
[+] |
| |
|
Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
---|
B | No SSE | 76 | THR | CB | O2 | B | 1397 | 3.47 | van der Waals | B | No SSE | 76 | THR | OG1 | C1 | B | 1397 | 3.81 | van der Waals | B | No SSE | 76 | THR | OG1 | O1 | B | 1397 | 3.79 | H.Bond | B | No SSE | 76 | THR | OG1 | O2 | B | 1397 | 2.94 | H.Bond | B | 93-103 H: 1 | 93 | SER | CB | O1 | B | 1397 | 3.66 | van der Waals | B | 93-103 H: 1 | 93 | SER | OG | C1 | B | 1397 | 3.69 | van der Waals | B | 93-103 H: 1 | 93 | SER | OG | O1 | B | 1397 | 2.76 | H.Bond | B | 93-103 H: 1 | 93 | SER | OG | O2 | B | 1397 | 3.84 | H.Bond | B | 93-103 H: 1 | 95 | ASN | CB | O1 | B | 1397 | 3.28 | van der Waals | B | 93-103 H: 1 | 95 | ASN | CG | O1 | B | 1397 | 3.43 | van der Waals | B | 93-103 H: 1 | 95 | ASN | OD1 | C1 | B | 1397 | 3.73 | van der Waals | B | 93-103 H: 1 | 95 | ASN | OD1 | O1 | B | 1397 | 2.82 | H.Bond | B | 93-103 H: 1 | 99 | ARG | NH1 | O3 | B | 1397 | 3.42 | H.Bond | B | 93-103 H: 1 | 99 | ARG | NH2 | C4 | B | 1397 | 3.67 | H.Bond | B | 93-103 H: 1 | 99 | ARG | NH2 | O3 | B | 1397 | 3.88 | H.Bond | B | 105-110 S: -1 | 108 | ARG | CZ | O3 | B | 1397 | 3.59 | van der Waals | B | 105-110 S: -1 | 108 | ARG | CZ | O4 | B | 1397 | 3.59 | van der Waals | B | 105-110 S: -1 | 108 | ARG | NH1 | C5 | B | 1397 | 3.81 | H.Bond | B | 105-110 S: -1 | 108 | ARG | NH1 | O3 | B | 1397 | 3.79 | H.Bond | B | 105-110 S: -1 | 108 | ARG | NH1 | O4 | B | 1397 | 3 | H.Bond | B | 105-110 S: -1 | 108 | ARG | NH2 | C5 | B | 1397 | 3.3 | H.Bond | B | 105-110 S: -1 | 108 | ARG | NH2 | O3 | B | 1397 | 2.57 | H.Bond | B | 105-110 S: -1 | 108 | ARG | NH2 | O4 | B | 1397 | 3.29 | H.Bond | B | 128-132 S: -1 | 131 | ARG | NH1 | C5 | B | 1397 | 3.67 | H.Bond | B | 128-132 S: -1 | 131 | ARG | NH1 | O3 | B | 1397 | 3.86 | H.Bond | B | 128-132 S: -1 | 131 | ARG | NH1 | O4 | B | 1397 | 3.54 | H.Bond | B | 135-140 H: 5 | 138 | TYR | CE2 | O7 | B | 1397 | 3.71 | van der Waals | B | 135-140 H: 5 | 138 | TYR | CZ | O7 | B | 1397 | 3.82 | van der Waals | B | 135-140 H: 5 | 138 | TYR | OH | O7 | B | 1397 | 3.04 | H.Bond | B | 267-283 H: 1 | 272 | ASP | CG | O5 | B | 1397 | 3.84 | van der Waals | B | 267-283 H: 1 | 272 | ASP | OD1 | O4 | B | 1397 | 3.37 | H.Bond | B | 267-283 H: 1 | 272 | ASP | OD1 | C6 | B | 1397 | 3.83 | van der Waals | B | 267-283 H: 1 | 272 | ASP | OD1 | O5 | B | 1397 | 2.79 | H.Bond | B | 299-302 S: 1 | 302 | GLU | OE1 | O3 | B | 1397 | 3.81 | H.Bond | B | No SSE | 304 | ALA | O | C5 | B | 1397 | 3.59 | van der Waals | B | No SSE | 304 | ALA | O | O3 | B | 1397 | 3.71 | H.Bond | B | No SSE | 304 | ALA | O | O4 | B | 1397 | 3.13 | H.Bond | B | Water | 2069 | HOH | O | C2 | B | 1397 | 2.93 | H.Bond | B | Water | 2069 | HOH | O | O7 | B | 1397 | 2.05 | H.Bond | B | Water | 2069 | HOH | O | C4 | B | 1397 | 2.43 | H.Bond | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
---|
1 | 4AJ3 | Isocitrate dehydrogenase | X-RAY | 1.90 | 0.189
|
---|
| Motif No./Chain | Mode | Bound Ligand /(Nbr. in PDB) | Show Details |
---|
| 1 / A |
> Structure: LHSSHH
> Sequence: TSNRRRYD
|
ICT /(1418) |
[+] |
|
> Graphics rep1:
|
[+] |
|
> Graphics rep2:
|
[+] |
|
> Graphics rep3:
|
[+] |
| |
|
Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
---|
A | No SSE | 105 | THR | CB | O3 | A | 1418 | 3.15 | van der Waals | A | No SSE | 105 | THR | OG1 | C5 | A | 1418 | 3.47 | van der Waals | A | No SSE | 105 | THR | OG1 | O3 | A | 1418 | 2.6 | H.Bond | A | No SSE | 105 | THR | OG1 | O4 | A | 1418 | 3.58 | H.Bond | A | 113-122 H: 1 | 113 | SER | CB | O4 | A | 1418 | 3.38 | van der Waals | A | 113-122 H: 1 | 113 | SER | OG | C5 | A | 1418 | 3.51 | van der Waals | A | 113-122 H: 1 | 113 | SER | OG | O3 | A | 1418 | 3.82 | H.Bond | A | 113-122 H: 1 | 113 | SER | OG | O4 | A | 1418 | 2.49 | H.Bond | A | 113-122 H: 1 | 115 | ASN | CB | O4 | A | 1418 | 3.44 | van der Waals | A | 113-122 H: 1 | 115 | ASN | CG | O4 | A | 1418 | 3.76 | van der Waals | A | 113-122 H: 1 | 115 | ASN | ND2 | C5 | A | 1418 | 3.42 | H.Bond | A | 113-122 H: 1 | 115 | ASN | ND2 | O3 | A | 1418 | 3.46 | H.Bond | A | 113-122 H: 1 | 115 | ASN | ND2 | O4 | A | 1418 | 3.1 | H.Bond | A | 113-122 H: 1 | 119 | ARG | CZ | O1 | A | 1418 | 3.52 | van der Waals | A | 113-122 H: 1 | 119 | ARG | CZ | O6 | A | 1418 | 3.66 | van der Waals | A | 113-122 H: 1 | 119 | ARG | NH1 | O1 | A | 1418 | 3.64 | H.Bond | A | 113-122 H: 1 | 119 | ARG | NH1 | C6 | A | 1418 | 3.65 | H.Bond | A | 113-122 H: 1 | 119 | ARG | NH1 | O6 | A | 1418 | 2.71 | H.Bond | A | 113-122 H: 1 | 119 | ARG | NH2 | C1 | A | 1418 | 3.67 | H.Bond | A | 113-122 H: 1 | 119 | ARG | NH2 | O1 | A | 1418 | 2.56 | H.Bond | A | 113-122 H: 1 | 119 | ARG | NH2 | O6 | A | 1418 | 3.76 | H.Bond | A | 126-132 S: -1 | 129 | ARG | CZ | O2 | A | 1418 | 3.59 | van der Waals | A | 126-132 S: -1 | 129 | ARG | NH1 | O2 | A | 1418 | 3.26 | H.Bond | A | 126-132 S: -1 | 129 | ARG | NH2 | C1 | A | 1418 | 3.3 | H.Bond | A | 126-132 S: -1 | 129 | ARG | NH2 | O1 | A | 1418 | 2.86 | H.Bond | A | 126-132 S: -1 | 129 | ARG | NH2 | O2 | A | 1418 | 3.03 | H.Bond | A | 148-154 S: -1 | 153 | ARG | CZ | O2 | A | 1418 | 3.96 | van der Waals | A | 148-154 S: -1 | 153 | ARG | CZ | O6 | A | 1418 | 3.5 | van der Waals | A | 148-154 S: -1 | 153 | ARG | NH1 | C1 | A | 1418 | 3.79 | H.Bond | A | 148-154 S: -1 | 153 | ARG | NH1 | O1 | A | 1418 | 3.97 | H.Bond | A | 148-154 S: -1 | 153 | ARG | NH1 | O2 | A | 1418 | 3.04 | H.Bond | A | 148-154 S: -1 | 153 | ARG | NH1 | O6 | A | 1418 | 3.41 | H.Bond | A | 148-154 S: -1 | 153 | ARG | NH2 | C6 | A | 1418 | 3.67 | H.Bond | A | 148-154 S: -1 | 153 | ARG | NH2 | O5 | A | 1418 | 3.87 | H.Bond | A | 148-154 S: -1 | 153 | ARG | NH2 | O6 | A | 1418 | 2.74 | H.Bond | A | 157-162 H: 5 | 160 | TYR | CE2 | C6 | A | 1418 | 3.58 | van der Waals | A | 157-162 H: 5 | 160 | TYR | CE2 | O5 | A | 1418 | 3.04 | van der Waals | A | 157-162 H: 5 | 160 | TYR | CE2 | O6 | A | 1418 | 3.53 | van der Waals | A | 157-162 H: 5 | 160 | TYR | CZ | C6 | A | 1418 | 3.82 | van der Waals | A | 157-162 H: 5 | 160 | TYR | CZ | O5 | A | 1418 | 3.02 | van der Waals | A | 157-162 H: 5 | 160 | TYR | CZ | O6 | A | 1418 | 3.84 | van der Waals | A | 157-162 H: 5 | 160 | TYR | OH | C6 | A | 1418 | 3.13 | van der Waals | A | 157-162 H: 5 | 160 | TYR | OH | O5 | A | 1418 | 2.2 | H.Bond | A | 157-162 H: 5 | 160 | TYR | OH | O6 | A | 1418 | 3.37 | H.Bond | A | 302-317 H: 1 | 307 | ASP | CG | O2 | A | 1418 | 3.96 | van der Waals | A | 302-317 H: 1 | 307 | ASP | CG | O7 | A | 1418 | 3.93 | van der Waals | A | 302-317 H: 1 | 307 | ASP | OD1 | C1 | A | 1418 | 3.77 | van der Waals | A | 302-317 H: 1 | 307 | ASP | OD1 | O2 | A | 1418 | 2.83 | H.Bond | A | 302-317 H: 1 | 307 | ASP | OD1 | C2 | A | 1418 | 3.99 | van der Waals | A | 302-317 H: 1 | 307 | ASP | OD1 | O7 | A | 1418 | 3.07 | H.Bond | A | 302-317 H: 1 | 307 | ASP | OD1 | O5 | A | 1418 | 3.89 | H.Bond | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
---|
1 | 4AJB | Isocitrate dehydrogenase | X-RAY | 1.80 | 0.183
|
---|
| Motif No./Chain | Mode | Bound Ligand /(Nbr. in PDB) | Show Details |
---|
| 1 / A |
> Structure: HSSHH
+4w
> Sequence: SRRRYD
|
ICT /(502) |
[+] |
|
> Graphics rep1:
|
[+] |
|
> Graphics rep2:
|
[+] |
|
> Graphics rep3:
|
[+] |
| |
|
Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
---|
A | 113-122 H: 1 | 113 | SER | CB | O3 | A | 502 | 3.52 | van der Waals | A | 113-122 H: 1 | 113 | SER | OG | C5 | A | 502 | 3.66 | van der Waals | A | 113-122 H: 1 | 113 | SER | OG | O3 | A | 502 | 2.78 | H.Bond | A | 113-122 H: 1 | 119 | ARG | CZ | O1 | A | 502 | 3.72 | van der Waals | A | 113-122 H: 1 | 119 | ARG | CZ | O5 | A | 502 | 3.89 | van der Waals | A | 113-122 H: 1 | 119 | ARG | NH1 | O1 | A | 502 | 3.78 | H.Bond | A | 113-122 H: 1 | 119 | ARG | NH1 | C6 | A | 502 | 3.82 | H.Bond | A | 113-122 H: 1 | 119 | ARG | NH1 | O5 | A | 502 | 2.83 | H.Bond | A | 113-122 H: 1 | 119 | ARG | NH2 | C1 | A | 502 | 3.83 | H.Bond | A | 113-122 H: 1 | 119 | ARG | NH2 | O1 | A | 502 | 2.8 | H.Bond | A | 126-132 S: -1 | 129 | ARG | CZ | O2 | A | 502 | 3.63 | van der Waals | A | 126-132 S: -1 | 129 | ARG | NH1 | O2 | A | 502 | 3.13 | H.Bond | A | 126-132 S: -1 | 129 | ARG | NH2 | C1 | A | 502 | 3.54 | H.Bond | A | 126-132 S: -1 | 129 | ARG | NH2 | O1 | A | 502 | 3.01 | H.Bond | A | 126-132 S: -1 | 129 | ARG | NH2 | O2 | A | 502 | 3.24 | H.Bond | A | 148-154 S: -1 | 153 | ARG | CZ | O5 | A | 502 | 3.37 | van der Waals | A | 148-154 S: -1 | 153 | ARG | NH1 | O2 | A | 502 | 3.49 | H.Bond | A | 148-154 S: -1 | 153 | ARG | NH1 | O5 | A | 502 | 3.24 | H.Bond | A | 148-154 S: -1 | 153 | ARG | NH2 | C6 | A | 502 | 3.59 | H.Bond | A | 148-154 S: -1 | 153 | ARG | NH2 | O5 | A | 502 | 2.68 | H.Bond | A | 148-154 S: -1 | 153 | ARG | NH2 | O6 | A | 502 | 3.77 | H.Bond | A | 157-162 H: 5 | 160 | TYR | CE2 | C6 | A | 502 | 3.71 | van der Waals | A | 157-162 H: 5 | 160 | TYR | CE2 | O5 | A | 502 | 3.61 | van der Waals | A | 157-162 H: 5 | 160 | TYR | CE2 | O6 | A | 502 | 3.27 | van der Waals | A | 157-162 H: 5 | 160 | TYR | CZ | O6 | A | 502 | 3.32 | van der Waals | A | 157-162 H: 5 | 160 | TYR | OH | C6 | A | 502 | 3.44 | van der Waals | A | 157-162 H: 5 | 160 | TYR | OH | O5 | A | 502 | 3.61 | H.Bond | A | 157-162 H: 5 | 160 | TYR | OH | O6 | A | 502 | 2.53 | H.Bond | A | 302-317 H: 1 | 307 | ASP | CG | O6 | A | 502 | 3.78 | van der Waals | A | 302-317 H: 1 | 307 | ASP | OD1 | C1 | A | 502 | 3.91 | van der Waals | A | 302-317 H: 1 | 307 | ASP | OD1 | O2 | A | 502 | 3.05 | H.Bond | A | 302-317 H: 1 | 307 | ASP | OD1 | O7 | A | 502 | 3.23 | H.Bond | A | 302-317 H: 1 | 307 | ASP | OD1 | C6 | A | 502 | 3.67 | van der Waals | A | 302-317 H: 1 | 307 | ASP | OD1 | O5 | A | 502 | 3.75 | H.Bond | A | 302-317 H: 1 | 307 | ASP | OD1 | O6 | A | 502 | 3.48 | H.Bond | A | 302-317 H: 1 | 307 | ASP | OD2 | O6 | A | 502 | 3.95 | H.Bond | A | Water | 2172 | HOH | O | O3 | A | 502 | 2.76 | H.Bond | A | Water | 2182 | HOH | O | O1 | A | 502 | 2.96 | H.Bond | A | Water | 2182 | HOH | O | O3 | A | 502 | 2.81 | H.Bond | A | Water | 2200 | HOH | O | O1 | A | 502 | 2.78 | H.Bond | A | Water | 2484 | HOH | O | O7 | A | 502 | 2.66 | H.Bond | A | Water | 2484 | HOH | O | O4 | A | 502 | 2.83 | H.Bond | |