Show Rep. genomes
Variants key:   α    β    γ    δ    ο    κ    η    ι    ζ    θ    ε    λ    μ   ||  VOC   VOI  || 
N#Seq. name UK region DateMutations of Concern/InterestMutations
++
D614G A222V P323L/F E484K/Q/A N501Y P681H/R T1001I Q27* △21765_6 E, S, N & M
components
1  PHEC-L306L77B  England  B.1.1.7  α ] [ VOC ]  G - L - Y H I *X
2  EDB18072  Scotland  B.1.1.7  α ] [ VOC ]  G - L - Y H I *
3  PHWC-PYFJAN  Wales  B.1.1.7  α ] [ VOC ]  G - L - Y H I *
4  PHEC-L306L887  NIreland  B.1.1.7  α ] [ VOC ]  G - L - Y H I *
5  MILK-159F314  England  B.1.351  β ] [ VOC ]  G - L K Y - - - -
6  QEUH-157D6C8  Scotland  B.1.351  β ] [ VOC ]  G - L K Y - - - -
7  CAMC-14E001E  Wales  B.1.351.3  β ] [ VOC ]  G - L K Y - - - -
8  NIRE-000199  NIreland  B.1.351  β ] [ VOC ]  G - L XX - - - -
9  PHEC-30FF10  England  P.1.16  γ ] [ VOC ]  G X L K Y - - - X
10  QEUH-158BEFC  Scotland  P.1.17  γ ] [ VOC ]  G - L K Y - - - -
11  MILK-15248AC  Wales  P.1  γ ] [ VOC ]  G - L K Y - - - -
12  NIRE-0015d2  NIreland  P.1  γ ] [ VOC ]  G - L K Y - - - -
13  MILK-2B1E068  England  B.1.617.2  δ ] [ VOC ]  G - L - - R - - -
14  QEUH-1ED557D  Scotland  B.1.617.2  δ ] [ VOC ]  G - L - - R - - -
15  PHWC-PD3UHR  Wales  B.1.617.2  δ ] [ VOC ]  G - L - - R - - -
16  RAND-151F710  NIreland  B.1.617.2  δ ] [ VOC ]  G - L - - R - - -
17  MILK-29BAC99  England  AY.4.2.2  &; ] [  ]  G V L - - R - - -
18  QEUH-17910FB  Scotland  AY.4.2  δ+ ] [ VOC ]  G V L - - R - - -
19  PHWC-PDHEYN  Wales  AY.4.2  δ+ ] [ VOC ]  G V L - - R - - -
20  NIRE-003f4e  NIreland  AY.4.2  δ+ ] [ VOC ]  G V L XXR - - -
21  DHSC-CYNQBYI  England  BA.1  ο ] [ VOC ]  G - L A Y H - - X
22  QEUH-328EFF3  Scotland  BA.1  ο ] [ VOC ]  G - L A Y H - -
23  MILK-32C9976  Wales  BA.1  ο ] [ VOC ]  G - L A Y H - -
24  NIRE-018c8e  NIreland  BA.1  ο ] [ VOC ]  G - L A Y H - -
25  PHEC-4S086Z4F  England  BA.2  ο ] [ VOC ]  G - L A Y H - X-
26  QEUH-329C129  Scotland  BA.2  ο ] [ VOC ]  G - L A Y H - - -
27  PHWC-P8EKWH  Wales  BA.2  ο ] [ VOC ]  G - L A Y H - - -
28  NIRE-018c37  NIreland  BA.2  ο ] [ VOC ]  G - L A Y H - - -
29  LSPA-2F5E736  England  BA.3  ο ] [ VOC ]  G - L A Y H - -
30  PHEC-L304L124  England  B.1.617.1  κ ] [ VOI ]  G - L Q - R - - -
31  EDB17878  Scotland  B.1.617.1  κ ] [ VOI ]  G - L Q - R - - X
32  PHWC-PYRUTE  Wales  B.1.617.1  κ ] [ VOI ]  G - L Q - R - - X
33  CAMC-13AEEAA  England  B.1.427  ε ] [ VOI ]  G - L - - - - - -
34  PHEC-3041E8  England  B.1.429  ε ] [ VOI ]  G - L - - - - X-
35  MILK-1576313  Wales  B.1.429  ε ] [ VOI ]  G - L - - - - - -
36  ALDP-15076E1  England  P.2  ζ ] [ VOI ]  G - L K - - - - -
37  EDB14658  Scotland  P.2  ζ ] [ VOI ]  G - L K - - - - -
38  PHWC-4CC251  Wales  P.2  ζ ] [ VOI ]  G - L K - - - - -
39  PHEC-L304L072  England  B.1.525  η ] [ VOI ]  G - F K - - - - X
40  QEUH-130F654  Scotland  B.1.525  η ] [ VOI ]  G - F K - - - -
41  PHWC-4C5E90  Wales  B.1.525  η ] [ VOI ]  G - F K - - - -
42  PHEC-M30AM759  NIreland  B.1.525  η ] [ VOI ]  G - F K - - - -
43  MILK-154EAF1  England  P.3  θ ] [ VOI ]  G X L K Y H - X-
44  EDB20741  Scotland  P.3  θ ] [ VOI ]  G X L K Y H - - -
45  LOND-12F79EE  England  B.1.526  ι ] [ VOI ]  G - L - - - - - -
46  CAMC-14F85AB  Scotland  B.1.526  ι ] [ VOI ]  G - L K - - - - -
47  MILK-156082C  England  C.37  λ ] [ VOC ]  G - L - - - - - -
48  PHEC-N303N77E  NIreland  C.37.1  λ ] [ VOC ]  G - L - - - - - -
49  LOND-1350BDD  England  B.1.621  μ ] [ VOI ]  G - L K Y H - - -
50  QEUH-1BA3933  Scotland  B.1.621  μ ] [ VOI ]  G - L K Y H - - -
51  PHWC-PYM3Q5  Wales  B.1.621  μ ] [ VOI ]  G - L K Y H - - -
52  NIRE-00acdd  NIreland  B.1.621  μ ] [ VOI ]  G - L XXH - - -

Main data source site(s):

SVGM-exp β-v.1.0 -July 2021, © Abdelkrim Rachedi at the Dept. of Biology, Saida University, Algeria, 2021.
Viruses β-v.4.0 -July 2021, © Abdelkrim Rachedi at the Dept. of Biology, Saida University, Algeria, v.1 - March 2020.
E-mail: rachedi@bioinformaticstools.org

Disclaimer: The Viruses Database system offers data as they are from sources(*) used in the data integration. The data are by no mean complete about all types viruses, however, the database is regularly updatad and
the tool system is continuously further developed. (*)Primarily the COVID-19 Genomics UK Consortium (COG-UK), NCBI/Genbank, EMBL genomics data & PDB structural data.
References:
  1. Mutations in the SARS-CoV-2 complete genome sequences from strains isolated in Blida province, Algeria.
    Abdelkrim Rachedi, JNBGP 2020: Journees Nationales virtuelles de bioinformatique: Genomique et proteomique
    - USDB, October 09-10, 2020 - Refer to DOI: 10.13140/RG.2.2.20838.45123
  2. Wibinaire1-JNBGP2020The Keynote Conference presentation (1h:30Min) is available here: https://www.youtube.com/watch?v=JaIU6ufeI4g&t=1690s
  3. The Viruses, data annotation & integration tool, created by the DIRC Data Integration Module, is based on an improved version of the algorithm reported in the following research paper:
    Abdelkrim Rachedi et al., GABAagent: a system for integrating data on GABA receptors. Bioinformatics. 2000 Apr;16(4):301-12.